YRC Public Data Repository - Protein Structure Prediction

Protein:	DAPB_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAPB_GEOSL.

Description	E-value	Query Range	Subject Range
DAPB_PSEPK - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas putida (strain KT2440) GN=dapB PE=3 SV=1	353.0	[0..1]	[266..1]
DAPB_PSEE4 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas entomophila (strain L48) GN=dapB PE=3 SV=1 gi\|95109001 - gi\|95109001\|emb\|CAK13697.1\| dihydrodipicolinate reductase [Pseudomonas entomophila L48]	353.0	[0..1]	[266..1]
tr\|I7AV70\|I7AV70... - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas putida (strain DOT-T1E) GN=dapB PE=3 SV=1 tr\|E4R634\|E4R634... - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas putida (strain BIRD-1) GN=dapB PE=3 SV=1 DAPB_PSEP1 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=dapB P...	350.0	[0..1]	[266..1]
DAPB_PSEU2 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=da...	350.0	[0..1]	[265..1]
gi\|213928510, gi... - gi\|213966660\|ref\|ZP_03394811.1\| dihydrodipicolinate reductase [Pseudomonas syringae pv. tomato T1], ... DAPB_PSESM - Dihydrodipicolinate reductase OS=Pseudomonas syringae pv. tomato GN=dapB PE=3 SV=1 DAPB_PSESM - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=dap...	349.0	[0..1]	[265..1]
DAPB_PSEAJ - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas amygdali pv. tabaci GN=dapB PE=3 SV=1	348.0	[0..1]	[265..1]
DAPB_PSEU5 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas stutzeri (strain A1501) GN=dapB PE=3 SV=1 gi\|33578042 - gi\|33578042\|gb\|AAQ22348.1\| dihydrodipicolinate reductase [Pseudomonas stutzeri A15]	348.0	[0..1]	[265..1]
DAPB_PSE14 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A ...	347.0	[0..1]	[265..1]
DAPB_PELCD - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) G...	347.0	[0..1]	[266..1]
DAPB_PSEAE - Dihydrodipicolinate reductase OS=Pseudomonas aeruginosa GN=dapB PE=3 SV=2 DAPB_PSEAB - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dapB PE=... gi\|126197718, gi... - gi\|254244340\|ref\|ZP_04937662.1\| dihydrodipicolinate reductase [Pseudomonas aeruginosa 2192], gi\|1945... DAPB_PSEA8 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas aeruginosa (strain LESB58) GN=dapB PE=3 SV... gi\|126170437, gi... - gi\|254238506\|ref\|ZP_04931829.1\| dihydrodipicolinate reductase [Pseudomonas aeruginosa C3719], gi\|194... DAPB_PSEAE - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C ...	346.0	[0..1]	[266..1]

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Predicted Domain #1

Region A:
Residues: [1-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKIAVCGAA GRMGQRIIVA AREAGCTISG ALERPGHEMV GQDAGLIAGC GALGVAISDD  60
   61 LNAVVEGCDV LIDFTTPKVS LKNLEVCALK KKSIVIGSTG FTPEERALAV ELAREIPAVL 120
  121 APNMSVGVNV CFKILKDVAK TLGDDFDVEI VELHHNKKKD APSGTAVRMG EVVAEALGRD 180
  181 YNKVATYHRE GICGERTKEE IGMQTVRGGD IVGEHTVYFI GMGERIEISH RAMTRDMFSR 240
  241 GSVRAAQWVV GKAPGLYDMQ DVLGLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	87.69897
Match:	1arzA
Description:	Dihydrodipicolinate reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	2.60548927745815	bayes_pls_golite062009
catalytic activity	2.54843319568228	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	1.54909195188343	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	0.841370849960815	bayes_pls_golite062009
saccharopine dehydrogenase activity	0.495113665163626	bayes_pls_golite062009
N-acetyl-gamma-glutamyl-phosphate reductase activity	0.0651785123513661	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: