YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995284, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	174 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995284, gi|....

Description	E-value	Query Range	Subject Range
gi\|7470017 - pir\|\|S74709 hypothetical protein sll1188 - Synechocystis sp. (strain PCC 6803) gi\|16329452, gi\|... - gi\|1651934\|dbj\|BAA16860.1\| sll1188 [Synechocystis sp. PCC 6803], gi\|16329452\|ref\|NP_440180.1\| hypoth...	236.0	[0..12]	[171..6]
gi\|18310898, gi\|... - gi\|18310898\|ref\|NP_562832.1\| hypothetical protein CPE1916 [Clostridium perfringens str. 13], gi\|1814...	235.0	[0..10]	[171..4]
gi\|44920890, gi\|... - gi\|45358133\|ref\|NP_987690.1\| hypothetical protein MMP0570 [Methanococcus maripaludis S2], gi\|4492089...	233.0	[0..11]	[170..19]
gi\|110675668, gi... - gi\|110801021\|ref\|YP_696596.1\| hypothetical protein CPF_2172 [Clostridium perfringens ATCC 13124], gi...	233.0	[0..9]	[171..3]
gi\|77918659, gi\|... - gi\|77918659\|ref\|YP_356474.1\| hypothetical protein Pcar_1054 [Pelobacter carbinolicus DSM 2380], gi\|7...	231.0	[0..8]	[172..2]
gi\|71836504, gi\|... - gi\|71836504\|ref\|ZP_00676273.1\| Protein of unknown function DUF985 [Pelobacter propionicus DSM 2379],...	231.0	[0..1]	[171..1]
gi\|91785226, gi\|... - gi\|91785226\|ref\|YP_560432.1\| hypothetical protein Bxe_A0553 [Burkholderia xenovorans LB400], gi\|9168...	229.0	[0..12]	[169..17]
gi\|46132274, gi\|... - gi\|73540978\|ref\|YP_295498.1\| hypothetical protein Reut_A1284 [Ralstonia eutropha JMP134], gi\|7211839...	229.0	[0..7]	[172..3]
gi\|94313639, gi\|... - gi\|94313639\|ref\|YP_586848.1\| hypothetical protein Rmet_4717 [Ralstonia metallidurans CH34], gi\|93357...	226.0	[0..3]	[172..24]
gi\|146294277, gi... - gi\|77814987\|ref\|ZP_00814234.1\| Protein of unknown function DUF985 [Shewanella putrefaciens CN-32], g... gi\|124511401, gi... - gi\|124544758\|ref\|ZP_01704006.1\| protein of unknown function DUF985 [Shewanella putrefaciens 200], gi...	226.0	[0..9]	[173..2]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPDRSGGPA AAELIAGLGL ERHPEGGWYR ETYRAAGTIP GTLLPGQVGG ERSFSTAIYF  60
   61 LLERGDISAL HRIRSDELWH FHAGAPLIVH VITPAGGSYA LTLGSDPASG ETFQAVVPAG 120
  121 CWFGAETTGD YSLVGCTVAP GFDFADFEMG SRADLLGRFP THAGIIRRLT RDGD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.0
Match:	1yudA
Description:	Crystal structure of hypothetical protein SO0799 from Shewanella oneidensis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits