YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982376, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982376, gi|....

Description	E-value	Query Range	Subject Range
gi\|78195467, gi\|... - gi\|78224212\|ref\|YP_385959.1\| methylamine utilization protein MauE, putative [Geobacter metallireduce...	154.0	[0..1]	[135..1]
gi\|38200714 - gi\|38200714\|emb\|CAE50410.1\| Putative membrane protein [Corynebacterium diphtheriae] gi\|38234451 - gi\|38234451\|ref\|NP_940218.1\| hypothetical protein DIP1881 [Corynebacterium diphtheriae NCTC 13129]	134.0	[0..8]	[138..10]
MAUE_METFL - (Q50414) Methylamine utilization protein mauE MAUE_METFK - Methylamine utilization protein MauE OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 68...	120.0	[0..5]	[108..7]
gi\|34396741, gi\|... - gi\|34540428\|ref\|NP_904907.1\| hypothetical protein PG0622 [Porphyromonas gingivalis W83], gi\|34396741...	118.0	[0..4]	[138..1]
gi\|110548287, gi... - gi\|222053918\|ref\|YP_002536280.1\| DoxX family protein [Geobacter sp. FRC-32], gi\|221563207\|gb\|ACM1917...	118.0	[0..1]	[137..1]
MAUE_METEX - Methylamine utilization protein mauE OS=Methylobacterium extorquens GN=mauE PE=4 SV=1 gi\|551310\|gb\|AAB... - mauE	117.0	[0..5]	[129..9]
gi\|86566489, gi\|... - gi\|86739627\|ref\|YP_480027.1\| DoxX [Frankia sp. CcI3], gi\|86566489\|gb\|ABD10298.1\| DoxX [Frankia sp. C...	116.0	[0..1]	[114..12]
gi\|72161571, gi\|... - gi\|72161571\|ref\|YP_289228.1\| hypothetical protein Tfu_1167 [Thermobifida fusca YX], gi\|71915303\|gb\|A... gi\|48834537 - ref\|ZP_00291546.1\| hypothetical protein Tfus02003008 [Thermobifida fusca]	115.0	[0..3]	[132..34]
gi\|46450576, gi\|... - gi\|46581155\|ref\|YP_011963.1\| hypothetical protein DVU2751 [Desulfovibrio vulgaris subsp. vulgaris st...	115.0	[0..3]	[122..37]
gi\|78218257, gi\|... - gi\|78355852\|ref\|YP_387301.1\| hypothetical protein Dde_0805 [Desulfovibrio desulfuricans subsp. desul...	110.0	[0..11]	[133..13]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAVKRHLTA LLRVALGVVF LYAAVIKIAN PPAFAGNVAA YQLLPYAGNY LVAAILPWIE  60
   61 AICGLLLVTG WRARSAAALV AVMNILFIVL LISTVARGLD IDCGCFRQGG EKTSAWTAIF 120
  121 RDIMLLVAAV FVFRKTKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	3.552842
Match:	PF07681.3
Description:	No description for PF07681.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits