YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982578, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982578, gi|....

Description	E-value	Query Range	Subject Range
gi\|146401676, gi... - gi\|88941787\|ref\|ZP_01147187.1\| Membrane transporters of cations and cationic drugs-like [Acidiphiliu...	133.0	[0..1]	[110..182]
gi\|84180564 - gi\|84180564\|gb\|ABC54729.1\| ORF3/QacEdelta1 fusion protein [Vibrio cholerae] gi\|148615590 - gi\|148615590\|gb\|ABQ96632.1\| Orf3/QacEdelta1 fusion protein [Salmonella enterica subsp. enterica sero... gi\|20086228 - gi\|20086228\|gb\|AAM03346.1\| ORF3-QacEdelta1 fusion protein [Proteus mirabilis] gi\|118511776 - gi\|118511776\|emb\|CAD20940.2\| ORF3-QacE (3'CS2) fusion protein [Salmonella enterica subsp. enterica s... gi\|74055072 - gi\|74055072\|gb\|AAZ95873.1\| ORF3-QacEdelta1 fusion protein [Escherichia coli]	131.0	[0..1]	[100..215]
gi\|26248204, gi\|... - gi\|26248204\|ref\|NP_754244.1\| EmrE protein [Escherichia coli CFT073], gi\|26108608\|gb\|AAN80811.1\|AE016... gi\|237705894, gi... - gi\|237705894\|ref\|ZP_04536375.1\| multidrug efflux protein [Escherichia sp. 3_2_53FAA], gi\|226900651\|g... gi\|218365562, gi... - gi\|218558793\|ref\|YP_002391706.1\| multidrug efflux protein [Escherichia coli S88], gi\|218365562\|emb\|C... gi\|218695541, gi... - gi\|218695541\|ref\|YP_002403208.1\| multidrug efflux protein [Escherichia coli 55989], gi\|218352273\|emb... gi\|91072728, gi\|... - gi\|91211154\|ref\|YP_541140.1\| multidrug efflux protein [Escherichia coli UTI89], gi\|91072728\|gb\|ABE07...	127.0	[0..1]	[110..61]
gi\|110642042, gi... - gi\|110642042\|ref\|YP_669772.1\| multidrug efflux protein [Escherichia coli 536], gi\|110343634\|gb\|ABG69... gi\|115513200, gi... - gi\|117624076\|ref\|YP_852989.1\| multidrug efflux protein [Escherichia coli APEC O1], gi\|115513200\|gb\|A... gi\|209919358, gi... - gi\|209919358\|ref\|YP_002293442.1\| multidrug efflux protein [Escherichia coli SE11], gi\|209912617\|dbj\|... gi\|110615455, gi... - gi\|110805907\|ref\|YP_689427.1\| multidrug efflux protein [Shigella flexneri 5 str. 8401], gi\|110615455...	126.0	[0..1]	[110..56]
gi\|287840 - gi\|287840\|emb\|CAA49570.1\| SugEL [Escherichia coli]	123.0	[0..3]	[106..75]
gi\|68262581 - gi\|68262581\|emb\|CAJ13509.1\| ORF3-QacEdelta1 fusion protein [Klebsiella pneumoniae] gi\|54303966 - gi\|54303966\|emb\|CAH61466.1\| ORF3-QacEdelta1 (3'CS2) fusion protein [Morganella morganii subsp. morga...	118.0	[0..1]	[83..215]
gi\|67533793, gi\|... - gi\|67545038\|ref\|ZP_00422963.1\| Small multidrug resistance protein [Burkholderia vietnamiensis G4], g...	118.0	[0..3]	[107..91]
gi\|187768464, gi... - gi\|187768464\|gb\|EDU32308.1\| EmrE protein [Escherichia coli O157:H7 str. EC4196], gi\|168776044\|ref\|ZP... gi\|168782480, gi... - gi\|189000005\|gb\|EDU68991.1\| EmrE protein [Escherichia coli O157:H7 str. EC4076], gi\|168782480\|ref\|ZP... gi\|189372505, gi... - gi\|189372505\|gb\|EDU90921.1\| EmrE protein [Escherichia coli O157:H7 str. EC869], gi\|168787619\|ref\|ZP_... gi\|189377247, gi... - gi\|189377247\|gb\|EDU95663.1\| EmrE protein [Escherichia coli O157:H7 str. EC508], gi\|168800445\|ref\|ZP_... gi\|168749746, gi... - gi\|188015988\|gb\|EDU54110.1\| EmrE protein [Escherichia coli O157:H7 str. EC4113], gi\|168749746\|ref\|ZP... gi\|189356404, gi... - gi\|189356404\|gb\|EDU74823.1\| EmrE protein [Escherichia coli O157:H7 str. EC4401], gi\|168756484\|ref\|ZP... gi\|189367187, gi... - gi\|189367187\|gb\|EDU85603.1\| EmrE protein [Escherichia coli O157:H7 str. EC4501], gi\|168762560\|ref\|ZP... gi\|168771013, gi... - gi\|189360148\|gb\|EDU78567.1\| EmrE protein [Escherichia coli O157:H7 str. EC4486], gi\|168771013\|ref\|ZP... gi\|15830868, gi\|... - gi\|15830868\|ref\|NP_309641.1\| multidrug efflux protein [Escherichia coli O157:H7 str. Sakai], gi\|1336... gi\|15830868, gi\|... - gi\|15830868\|ref\|NP_309641.1\| EmrE [Escherichia coli O157:H7], gi\|13361078\|dbj\|BAB35037.1\| integral m... gi\|209397090, gi... - gi\|209397090\|ref\|YP_002270059.1\| EmrE protein [Escherichia coli O157:H7 str. EC4115], gi\|209158490\|g... gi\|25321315, gi\|... - pir\|\|C85688 hypothetical protein Z1870 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|217328543, gi... - gi\|217328543\|ref\|ZP_03444625.1\| EmrE protein [Escherichia coli O157:H7 str. TW14588], gi\|217318970\|g... gi\|12514795, gi\|... - gi\|15801338\|ref\|NP_287355.1\| multidrug efflux protein [Escherichia coli O157:H7 EDL933], gi\|12514795... gi\|195938774 - gi\|195938774\|ref\|ZP_03084156.1\| multidrug efflux protein [Escherichia coli O157:H7 str. EC4024] gi\|208729278, gi... - gi\|208809477\|ref\|ZP_03251814.1\| EmrE protein [Escherichia coli O157:H7 str. EC4206], gi\|208729278\|gb... gi\|208815474, gi... - gi\|208815474\|ref\|ZP_03256653.1\| EmrE protein [Escherichia coli O157:H7 str. EC4045], gi\|208732122\|gb... gi\|254792602, gi... - gi\|254792602\|ref\|YP_003077439.1\| methylviologen resistance protein encoded within prophage CP-933X [... gi\|208737630, gi... - gi\|208822145\|ref\|ZP_03262464.1\| EmrE protein [Escherichia coli O157:H7 str. EC4042], gi\|208737630\|gb...	115.0	[0..1]	[110..1]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHKWLYLLVA IISEVAGTTA LKSAEGFTRL WPSCVVVAGY ASAFYFLSLT LKAIPVGIAY  60
   61 AIWSGLGTAL VAVVAWVFMG QRLDLPAVFG ILLIIAGVLV LNLCSTSATH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	2i68A
Description:	No description for 2i68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits