YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982662, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	256 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982662, gi|....

Description	E-value	Query Range	Subject Range
gi\|109451848, gi... - gi\|109451848\|emb\|CAK54795.1\| C22orf25 [synthetic construct], gi\|109451270\|emb\|CAK54496.1\| C22orf25 [... HGNC:25439\|Ensem... - 22 open reading frame 25 C22orf25 - chromosome 22 open reading frame 25	370.0	[0..1]	[256..1]
gi\|73995915 - gi\|73995915\|ref\|XP_850154.1\| PREDICTED: similar to Ser/Thr-rich protein T10 in DGCR region [Canis fa...	357.0	[0..1]	[256..1]
gi\|74219739, gi\|... - gi\|74227275\|dbj\|BAE21736.1\| unnamed protein product [Mus musculus], gi\|74219739\|dbj\|BAE40462.1\| unna...	355.0	[0..1]	[256..1]
gi\|149019786, gi... - gi\|62658192\|ref\|XP_341011.2\| PREDICTED: similar to Ser/Thr-rich protein T10 in DGCR region [Rattus n...	348.0	[0..1]	[256..1]
TNG2_BOVIN - Transport and Golgi organization protein 2 homolog OS=Bos taurus GN=TANGO2 PE=2 SV=1	343.0	[0..1]	[256..1]
gi\|23098506, gi\|... - gi\|23098506\|ref\|NP_691972.1\| hypothetical protein OB1051 [Oceanobacillus iheyensis HTE831], gi\|22776...	339.0	[0..1]	[256..1]
gi\|77461597, gi\|... - gi\|77461597\|ref\|YP_351104.1\| hypothetical protein Pfl01_5376 [Pseudomonas fluorescens Pf0-1], gi\|773...	330.0	[0..1]	[249..1]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCLILFALDA HPRYRLVLAA NRDEFYARPT APAAFWDDAP QVLAGRDLTA GGTWCGVTRD  60
   61 GRIAAVTNYR DPGAHRVGAR SRGELVAGFL GGDEAPSRWL EHLQRNGH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [109-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYNGFNLIFG DGNGLHYHSN RGAAASPLSP GIHGLSNHLL DTPWPKVARG RDALARLLAT  60
   61 ADEPAVDDLF AILANRTPAP DHLLPDTGVS LDWERLLSPL FITSPTYGTR SSTVILVDRS 120
  121 GQCTFVERSY NGAADHPRTV EYRFEVIT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits