YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982706, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982706, gi|....

Description	E-value	Query Range	Subject Range
gi\|224582450, gi... - gi\|224582450\|ref\|YP_002636248.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... gi\|62179216, gi\|... - gi\|62179216\|ref\|YP_215633.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ent...	160.0	[0..1]	[135..1]
gi\|213613069 - gi\|213613069\|ref\|ZP_03370895.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|213647691 - gi\|213647691\|ref\|ZP_03377744.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|213850322 - gi\|213850322\|ref\|ZP_03381220.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|56414248, gi\|... - gi\|56414248\|ref\|YP_151323.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ent... gi\|214003305 - gi\|214003305\|ref\|ZP_03414040.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|213023434 - gi\|213023434\|ref\|ZP_03337881.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|213051866 - gi\|213051866\|ref\|ZP_03344744.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|213417566 - gi\|213417566\|ref\|ZP_03350708.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|213425121 - gi\|213425121\|ref\|ZP_03357871.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|200390133, gi... - gi\|200390133\|ref\|ZP_03216744.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|204930449, gi... - gi\|204930449\|ref\|ZP_03221379.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|205351905, gi... - gi\|205351905\|ref\|YP_002225706.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... gi\|207856082, gi... - gi\|207856082\|ref\|YP_002242733.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... gi\|197213843, gi... - gi\|197250140\|ref\|YP_002145589.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... gi\|197241450, gi... - gi\|197263195\|ref\|ZP_03163269.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|197363171, gi... - gi\|197363171\|ref\|YP_002142808.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... gi\|197939904, gi... - gi\|198245388\|ref\|YP_002214607.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... lcl\|NC_016856.1_... - [gene=rnk] [protein=nucleoside diphosphate kinase regulator] [protein_id=YP_005236325.1] [location=c... gi\|16763993, gi\|... - gi\|16763993\|ref\|NP_459608.1\| nucleoside diphosphate kinase regulator [Salmonella typhimurium LT2], g... gi\|29138282, gi\|... - gi\|29142651\|ref\|NP_805993.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ent... gi\|25511993, gi\|... - gi\|25511993\|pir\|\|AC0578 regulator of nucleoside diphosphate kinase STY0664 [imported] - Salmonella e... gi\|16759576 - gi\|16759576\|ref\|NP_455193.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ent... gi\|238911567 - gi\|238911567\|ref\|ZP_04655404.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|195631988, gi... - gi\|195631988\|gb\|EDX50508.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ente... gi\|194409243, gi... - gi\|194450939\|ref\|YP_002044647.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... gi\|194471151, gi... - gi\|194471151\|ref\|ZP_03077135.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|194711103, gi... - gi\|194735601\|ref\|YP_002113733.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... gi\|205334065, gi... - gi\|205334065\|gb\|EDZ20829.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ente... gi\|168236603, gi... - gi\|197290337\|gb\|EDY29693.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ente... gi\|205339721, gi... - gi\|205339721\|gb\|EDZ26485.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ente... gi\|168260874, gi... - gi\|205349901\|gb\|EDZ36532.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ente... gi\|161615176, gi... - gi\|161615176\|ref\|YP_001589141.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... gi\|167550854, gi... - gi\|205324214\|gb\|EDZ12053.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ente... gi\|167990616, gi... - gi\|205330837\|gb\|EDZ17601.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ente...	159.0	[0..1]	[135..1]
gi\|39995838, gi\|... - gi\|39995838\|ref\|NP_951789.1\| nucleoside diphosphate kinase regulator protein, putative [Geobacter su...	158.0	[0..2]	[135..6]
gi\|78195058, gi\|... - gi\|78223803\|ref\|YP_385550.1\| GreA/GreB family elongation factor [Geobacter metallireducens GS-15], g...	158.0	[0..2]	[134..6]
gi\|46156715 - gi\|46156715\|ref\|ZP_00132245.2\| COG0782: Transcription elongation factor [Haemophilus somnus 2336]	155.0	[0..3]	[126..36]
gi\|192930987, gi... - gi\|75258653\|ref\|ZP_00730060.1\| COG0782: Transcription elongation factor [Escherichia coli E22], gi\|1...	154.0	[0..1]	[133..1]
gi\|56179097, gi\|... - gi\|56460087\|ref\|YP_155368.1\| transcription elongation factor GreA [Idiomarina loihiensis L2TR], gi\|5...	154.0	[0..2]	[126..25]
gi\|34103806, gi\|... - gi\|34497951\|ref\|NP_902166.1\| nucleoside diphosphate kinase regulator [Chromobacterium violaceum ATCC...	154.0	[0..3]	[135..4]
gi\|109456692, gi... - gi\|110680576\|ref\|YP_683583.1\| transcription elongation factor GreA [Roseobacter denitrificans OCh 11...	154.0	[0..2]	[125..181]
gi\|74056642, gi\|... - gi\|74317147\|ref\|YP_314887.1\| GreA/GreB family elongation factor [Thiobacillus denitrificans ATCC 252...	153.0	[0..3]	[126..26]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTRAIYVTE DDLSRLEEIL DTIPFRDRKD LQKLEDELAS AMIVDPKDVP PNVVTMNSRV  60
   61 KLRDLRADKE MTISLVFPND ANIAEGKISI LSPIGTAILG FGAGDTLDLA VRSFAKKIRI 120
  121 EEVLYQPGAA GSHAR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	2pn0A
Description:	No description for 2pn0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits