YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39983709, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39983709, gi|....

Description	E-value	Query Range	Subject Range
gi\|78222868, gi\|... - gi\|78222868\|ref\|YP_384615.1\| creatininase [Geobacter metallireducens GS-15], gi\|78194123\|gb\|ABB31890...	270.0	[0..1]	[239..1]
gi\|46134818, gi\|... - gi\|75907458\|ref\|YP_321754.1\| creatininase [Anabaena variabilis ATCC 29413], gi\|75701183\|gb\|ABA20859....	261.0	[0..1]	[229..1]
gi\|110165166, gi... - gi\|71675216\|ref\|ZP_00672961.1\| Creatininase [Trichodesmium erythraeum IMS101], gi\|71671332\|gb\|EAO279...	260.0	[0..6]	[239..14]
gi\|88917734, gi\|... - gi\|88935495\|ref\|ZP_01141126.1\| creatinine amidohydrolase [Geobacter uraniumreducens Rf4], gi\|8891773...	260.0	[0..1]	[239..1]
gi\|33239716, gi\|... - gi\|33239716\|ref\|NP_874658.1\| amidase [Prochlorococcus marinus subsp. marinus str. CCMP1375], gi\|3323...	260.0	[0..1]	[234..19]
gi\|23127632, gi\|... - gi\|23127632\|ref\|ZP_00109497.1\| COG1402: Uncharacterized protein, putative amidase [Nostoc punctiform...	258.0	[0..1]	[229..1]
gi\|17231775, gi\|... - gi\|17231775\|ref\|NP_488323.1\| hypothetical protein all4283 [Nostoc sp. PCC 7120], gi\|17133418\|dbj\|BAB... gi\|25531747 - pir\|\|AD2341 hypothetical protein all4283 [imported] - Nostoc sp. (strain PCC 7120)	258.0	[0..1]	[229..1]
gi\|7469683 - pir\|\|S76664 hypothetical protein - Synechocystis sp. (strain PCC 6803) gi\|1001770, gi\|1... - gi\|16331810\|ref\|NP_442538.1\| hypothetical protein sll0596 [Synechocystis sp. PCC 6803], gi\|1001770\|d...	254.0	[0..1]	[229..1]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIETMTMVE FEEGLRATRT VLVPFGSVEE HGSHLPLSTD TIQAYEVGKK AARLIPLFVA  60
   61 PPVHYGSCRS TSCHPGTISI TTGTLKSLMK DIVRSLYQQG LRNVIILTGH AGGSHRMALQ 120
  121 DAGEELLPEL PELNIAVVTE YELAYHEGKS IIETEGDSHA GEIETSRIMH SHPDLVKGCA 180
  181 EREFPSFPPG LLVRNKRKYW PGGVWGDPSK ASVEKGRLIE DLVVAKIVQL ARTLEAFKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.522879
Match:	1j2tA
Description:	Creatininase Mn
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.13806785143726	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides	1.02192960993617	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.61659135281905	bayes_pls_golite062009
hydrolase activity	0.257680585858544	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: