YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996927, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996927, gi|....

Description	E-value	Query Range	Subject Range
gi\|84375793, gi\|... - gi\|84393584\|ref\|ZP_00992337.1\| chorismate mutase/prephenate dehydrogenase [Vibrio splendidus 12B01],...	113.0	[0..1]	[93..3]
gi\|86148428, gi\|... - gi\|86148428\|ref\|ZP_01066719.1\| chorismate mutase/prephenate dehydrogenase [Vibrio sp. MED222], gi\|85...	113.0	[0..1]	[93..3]
gi\|48771087, gi\|... - gi\|94309661\|ref\|YP_582871.1\| prephenate dehydratase / chorismate mutase [Ralstonia metallidurans CH3...	112.0	[0..2]	[86..35]
gi\|91227656, gi\|... - gi\|91227656\|ref\|ZP_01261933.1\| chorismate mutase/prephenate dehydrogenase [Vibrio alginolyticus 12G0...	112.0	[0..1]	[94..3]
gi\|84361153, gi\|... - gi\|84361153\|ref\|ZP_00985833.1\| COG0077: Prephenate dehydratase [Burkholderia dolosa AUO158], gi\|2542...	111.0	[0..2]	[93..8]
gi\|73542260, gi\|... - gi\|73542260\|ref\|YP_296780.1\| prephenate dehydratase [Ralstonia eutropha JMP134], gi\|72119673\|gb\|AAZ6...	110.0	[0..2]	[86..30]
gi\|28897321, gi\|... - gi\|28897321\|ref\|NP_796926.1\| bifunctional chorismate mutase/prephenate dehydrogenase [Vibrio parahae... gi\|28805530 - gi\|28805530\|dbj\|BAC58810.1\| chorismate mutase/prephenate dehydrogenase [Vibrio parahaemolyticus RIMD...	110.0	[0..1]	[93..3]
gi\|113525594, gi... - gi\|113866818\|ref\|YP_725307.1\| prephenate dehydratase, chorismate mutase [Ralstonia eutropha H16], gi...	110.0	[0..1]	[93..33]
gi\|254230250, gi... - gi\|75854869\|ref\|ZP_00762539.1\| COG0287: Prephenate dehydrogenase [Vibrio sp. Ex25], gi\|254230250\|ref...	110.0	[0..1]	[93..3]
gi\|67546806, gi\|... - gi\|67546806\|ref\|ZP_00424716.1\| Chorismate mutase, gamma, beta and epsilon proteobacteria [Burkholder...	110.0	[0..2]	[93..8]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIDQIRQEI DRLDSELLRI FNRRAGLALE IGAIKKDKGL PVYDPTREKK IFERMQRENT  60
   61 GPLDDGAIVR LFERVIDESR RLERIMTHRG ESDGRKEPSC SSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.0
Match:	2d8dA
Description:	No description for 2d8dA was found.

Predicted functions:

Term	Confidence	Notes
chorismate mutase activity	3.92706714868161	bayes_pls_golite062009
prephenate dehydratase activity	2.47223657985094	bayes_pls_golite062009
catalytic activity	1.46550169341481	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: