YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39983973, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39983973, gi|....

Description	E-value	Query Range	Subject Range
gi\|75196111 - gi\|75196111\|ref\|ZP_00706181.1\| COG1596: Periplasmic protein involved in polysaccharide export [Esche...	274.0	[0..1]	[277..28]
YC04_KLEPN - Putative capsule polysaccharide export protein OS=Klebsiella pneumoniae PE=3 SV=1	274.0	[0..1]	[277..63]
gi\|24113446, gi\|... - gi\|24113446\|ref\|NP_707956.1\| putative polysaccharide export protein [Shigella flexneri 2a str. 301],... gi\|30041764, gi\|... - gi\|30063511\|ref\|NP_837682.1\| putative polysaccharide export protein [Shigella flexneri 2a str. 2457T...	269.0	[0..1]	[277..63]
gi\|160864077, gi... - gi\|161502730\|ref\|YP_001569842.1\| hypothetical protein SARI_00780 [Salmonella enterica subsp. arizona... lcl\|NC_016856.1_... - [gene=wza] [protein=putative outer membrane polysaccharide export protein] [protein_id=YP_005238154.... WZA_SALTY - Putative polysaccharide export protein wza OS=Salmonella typhimurium GN=wza PE=3 SV=1 gi\|56127238, gi\|... - gi\|56412981\|ref\|YP_150056.1\| putative polysaccharide export protein [Salmonella enterica subsp. ente... gi\|62128322, gi\|... - gi\|62180689\|ref\|YP_217106.1\| putative polysaccharide export protein, outer membrane [Salmonella ente... WZA_SALTY - Putative polysaccharide export protein wza OS=Salmonella typhimurium GN=wza PE=3 SV=1 WZA_SALTY - Putative polysaccharide export protein wza OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7...	269.0	[0..1]	[277..63]
gi\|227835466, gi... - gi\|227887116\|ref\|ZP_04004921.1\| polysaccharide exporter [Escherichia coli 83972], gi\|227835466\|gb\|EE... gi\|110343864, gi... - gi\|110642272\|ref\|YP_670002.1\| putative polysaccharide export protein wza precursor [Escherichia coli...	269.0	[0..1]	[277..63]
gi\|115513382, gi... - gi\|117624258\|ref\|YP_853171.1\| putative polysaccharide export protein [Escherichia coli APEC O1], gi\|... gi\|238861669, gi... - gi\|238901252\|ref\|YP_002927048.1\| lipoprotein required for capsular polysaccharide translocation thro... gi\|242377713, gi... - gi\|251785440\|ref\|YP_002999744.1\| hypothetical protein B21_01957 [Escherichia coli BL21], gi\|24237771... gi\|124500382, gi... - gi\|124528695\|ref\|ZP_01699953.1\| polysaccharide export protein [Escherichia coli B], gi\|124500382\|gb\|... gi\|226900883, gi... - gi\|237704517\|ref\|ZP_04534998.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|254593246, gi... - gi\|254793846\|ref\|YP_003078683.1\| lipoprotein required for capsular polysaccharide translocation thro... EG13566 - colanic acid export protein; outer membrane auxillary lipoprotein / Colanic acid export channel lipo... gi\|254288842, gi... - gi\|254288842\|ref\|YP_003054590.1\| lipoprotein required for capsular polysaccharide translocation thro... gi\|253973955, gi... - gi\|254162054\|ref\|YP_003045162.1\| lipoprotein required for capsular polysaccharide translocation thro... EG13566 - colanic acid export protein; outer membrane auxillary lipoprotein / Colanic acid export channel lipo... WZA_ECO57 - Putative polysaccharide export protein wza OS=Escherichia coli O157:H7 GN=wza PE=3 SV=1 gi\|91211349, gi\|... - gi\|91211349\|ref\|YP_541335.1\| putative polysaccharide export protein [Escherichia coli UTI89], gi\|910... gi\|15832121, gi\|... - gi\|15832121\|ref\|NP_310894.1\| putative polysaccharide export protein [Escherichia coli O157:H7 str. S... gi\|12516259, gi\|... - gi\|15802542\|ref\|NP_288568.1\| putative polysaccharide export protein [Escherichia coli O157:H7 EDL933... gi\|157080932, gi... - gi\|157158902\|ref\|YP_001463415.1\| polysaccharide biosynthesis/export protein [Escherichia coli E24377... gi\|168757961, gi... - gi\|189355147\|gb\|EDU73566.1\| polysaccharide biosynthesis/export protein [Escherichia coli O157:H7 str... gi\|209398882, gi... - gi\|209398882\|ref\|YP_002271305.1\| polysaccharide biosynthesis/export protein [Escherichia coli O157:H... gi\|208817195, gi... - gi\|208817195\|ref\|ZP_03258287.1\| polysaccharide biosynthesis/export protein [Escherichia coli O157:H7... gi\|215487285, gi... - gi\|215487285\|ref\|YP_002329716.1\| lipoprotein required for capsular polysaccharide translocation thro... gi\|209912786, gi... - gi\|209919527\|ref\|YP_002293611.1\| putative polysaccharide export protein [Escherichia coli SE11], gi\|... WZA_ECOLI - Putative polysaccharide export protein wza precursor - Escherichia coli gi\|194428764, gi... - gi\|194428764\|ref\|ZP_03061300.1\| polysaccharide biosynthesis/export protein [Escherichia coli B171], ... gi\|188488260, gi... - gi\|188493061\|ref\|ZP_03000331.1\| polysaccharide biosynthesis/export protein [Escherichia coli 53638],... gi\|208809309, gi... - gi\|208809309\|ref\|ZP_03251646.1\| polysaccharide biosynthesis/export protein [Escherichia coli O157:H7... gi\|195938255 - gi\|195938255\|ref\|ZP_03083637.1\| lipoprotein required for capsular polysaccharide translocation throu... gi\|170081692, gi... - gi\|170081692\|ref\|YP_001731012.1\| lipoprotein required for capsular polysaccharide translocation thro... gi\|170019611, gi... - gi\|170019611\|ref\|YP_001724565.1\| polysaccharide export protein [Escherichia coli ATCC 8739], gi\|1697... gi\|187731528, gi... - gi\|187731528\|ref\|YP_001879817.1\| polysaccharide biosynthesis/export protein [Shigella boydii CDC 308... gi\|170521488, gi... - gi\|170683770\|ref\|YP_001743079.1\| polysaccharide biosynthesis/export protein [Escherichia coli SMS-3-... gi\|168769816, gi... - gi\|189361272\|gb\|EDU79691.1\| polysaccharide biosynthesis/export protein [Escherichia coli O157:H7 str... gi\|189367754, gi... - gi\|189367754\|gb\|EDU86170.1\| polysaccharide biosynthesis/export protein [Escherichia coli O157:H7 str... gi\|168799055, gi... - gi\|189378498\|gb\|EDU96914.1\| polysaccharide biosynthesis/export protein [Escherichia coli O157:H7 str... gi\|168775488, gi... - gi\|187768976\|gb\|EDU32820.1\| polysaccharide biosynthesis/export protein [Escherichia coli O157:H7 str... gi\|85675205, gi\|... - gi\|89108882\|ref\|AP_002662.1\| lipoprotein required for capsular polysaccharide translocation through ... gi\|73856064, gi\|... - gi\|74312587\|ref\|YP_311006.1\| putative polysaccharide export protein [Shigella sonnei Ss046], gi\|7385... gi\|218705595, gi... - gi\|218705595\|ref\|YP_002413114.1\| lipoprotein required for capsular polysaccharide translocation thro... gi\|218369332, gi... - gi\|218699346\|ref\|YP_002406975.1\| lipoprotein required for capsular polysaccharide translocation thro... gi\|168986387, gi... - gi\|168986387\|dbj\|BAG11926.1\| lipoprotein Wza required for capsular polysaccharide translocation thro... gi\|218365710, gi... - gi\|218558941\|ref\|YP_002391854.1\| lipoprotein required for capsular polysaccharide translocation thro... gi\|218361398, gi... - gi\|218554630\|ref\|YP_002387543.1\| lipoprotein required for capsular polysaccharide translocation thro... gi\|218352417, gi... - gi\|218695685\|ref\|YP_002403352.1\| lipoprotein required for capsular polysaccharide translocation thro... gi\|218690120, gi... - gi\|218690120\|ref\|YP_002398332.1\| lipoprotein required for capsular polysaccharide translocation thro...	269.0	[0..1]	[277..63]
gi\|4808909 - gi\|4808909\|gb\|AAD30002.1\|AF118249_1 putative outer membrane lipoprotein Wza [Escherichia coli]	268.0	[0..1]	[277..12]
gi\|88595368 - gi\|88595368\|gb\|AAL09161.2\| outer membrane capsular polysaccharide transport protein-Wza [Vibrio vuln...	268.0	[0..6]	[277..101]
gi\|110806031, gi... - gi\|110806031\|ref\|YP_689551.1\| putative polysaccharide export protein [Shigella flexneri 5 str. 8401]...	268.0	[0..1]	[277..58]

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Predicted Domain #1

Region A:
Residues: [1-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLKFLICAL SLLLPMLAWS ADYVIGEGDG LDISVWGVKE LNVGVKVRPD GKITIPGLGD  60
   61 VVASGFTPAQ LQADLAHRLK ELVKNPIVTV TVREITNSKV YIFGGGVQSG VVDLNRRTTL 120
  121 LQLLCSIGNV GAGDGKGGGS AAGPSTKVAD YRKAYVLRNG KKVKEDFYRL FITGDTSEDI 180
  181 VIESGDAIFI PQAQEKNVYV LGAVTNPRFI EYREGMTVME AILESGGFTK FARQNDTVIR 240
  241 RRDGDKEALI EVKAKDLVKD GDLSQNVKLS PGDYIIVKEG MF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.221849
Match:	2j58A
Description:	No description for 2j58A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits