YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997435, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997435, gi|....

Description	E-value	Query Range	Subject Range
gi\|22778791, gi\|... - gi\|23100558\|ref\|NP_694025.1\| putative monovalent cation/H+ antiporter subunit G [Oceanobacillus ihey...	131.0	[0..1]	[116..6]
gi\|18977823, gi\|... - gi\|18977823\|ref\|NP_579180.1\| putative monovalent cation/H+ antiporter subunit G [Pyrococcus furiosus...	130.0	[0..4]	[114..6]
gi\|6650389 - gi\|6650389\|gb\|AAF21818.1\|AF097740_7 multiple resistance and pH regulation related protein G [Bacillu... MRPG_BACPE - Na(+)/H(+) antiporter subunit G OS=Bacillus pseudofirmus (strain OF4) GN=mrpG PE=1 SV=1 MRPG_BACPF - Na(+)/H(+) antiporter subunit G OS=Bacillus pseudofirmus GN=mrpG PE=1 SV=1	129.0	[0..2]	[112..4]
gi\|57159483, gi\|... - gi\|57641159\|ref\|YP_183637.1\| putative monovalent cation/H+ antiporter subunit G [Thermococcus kodaka...	126.0	[0..5]	[121..7]
gi\|68551881, gi\|... - gi\|68551881\|ref\|ZP_00591275.1\| Na+/H+ antiporter subunit [Prosthecochloris aestuarii DSM 271], gi\|68...	124.0	[0..1]	[110..1]
gi\|172057712, gi... - gi\|68054014\|ref\|ZP_00538179.1\| Na+/H+ antiporter subunit [Exiguobacterium sibiricum 255-15], gi\|6800...	123.0	[0..1]	[108..4]
gi\|56909637, gi\|... - gi\|56963394\|ref\|YP_175125.1\| putative monovalent cation/H+ antiporter subunit G [Bacillus clausii KS...	122.0	[0..2]	[112..4]
gi\|71836484, gi\|... - gi\|71836484\|ref\|ZP_00676253.1\| Na+/H+ antiporter subunit [Pelobacter propionicus DSM 2379], gi\|71743...	122.0	[0..1]	[121..1]
gi\|77865495, gi\|... - gi\|77955626\|ref\|ZP_00819982.1\| Na+/H+ antiporter subunit [Marinobacter aquaeolei VT8], gi\|77865495\|g...	121.0	[0..1]	[108..1]
gi\|15613876, gi\|... - gi\|15613876\|ref\|NP_242179.1\| putative monovalent cation/H+ antiporter subunit G [Bacillus halodurans... gi\|25347599 - pir\|\|A83814 Na+/H+ antiporter BH1313 [imported] - Bacillus halodurans (strain C-125)	120.0	[0..2]	[110..4]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDTIIAILL GGGAFFAVLA AIGIVRFPDL YVRLSAATKA STLGTSLILA GVALFFDDAA  60
   61 VTGKITAIIV FIALTAPVAA HMLGRAAYFS GVPLWEKSVR DDLASSGEWC KRDDTDGAGT 120
  121 GQADSRADT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	38.070581
Match:	PF03334.5
Description:	No description for PF03334.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits