YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997657, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	161 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997657, gi|....

Description	E-value	Query Range	Subject Range
gi\|76649259 - gi\|76649259\|ref\|XP_886516.1\| PREDICTED: similar to 6-phosphofructo-2-kinase/fructose-2,6-biphosphata...	128.0	[0..3]	[140..252]
gi\|54112027 - gi\|54112027\|gb\|AAV28719.1\| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 splice isoform 5 [H... gi\|114586701 - gi\|114586701\|ref\|XP_001158238.1\| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 is...	127.0	[0..3]	[140..252]
gi\|109040014 - gi\|109040014\|ref\|XP_001112410.1\| PREDICTED: similar to 6-phosphofructo-2-kinase/fructose-2,6-biphosp...	127.0	[0..3]	[140..252]
gi\|6137441 - gi\|6137441\|pdb\|3BIF\|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Empty 6-Pf-2k Act...	122.0	[0..3]	[140..251]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLVVRHAE AVERAPAIAE EDRWLTPRGR ASFATSVRVI ARRRMSLDLI VTSPLVRAVQ  60
   61 TAELLAAGLD YDGELAVSRE LAPGFDREGL ARLLAGRPGA SHVAIVGHEP DVGRVVADLL 120
  121 GRPEAVPLRK GMAVALELDP ATGTARLRWV VHRGEKTRTL P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.221849
Match:	1ujbA
Description:	Structure of the protein histidine phosphatase SixA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits