YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997907, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	190 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997907, gi|....

Description	E-value	Query Range	Subject Range
gi\|83573048, gi\|... - gi\|83590134\|ref\|YP_430143.1\| rubrerythrin [Moorella thermoacetica ATCC 39073], gi\|83573048\|gb\|ABC196... gi\|6449424 - gi\|6449424\|gb\|AAF08979.1\| rubrerythrin [Moorella thermoacetica]	201.0	[0..2]	[190..3]
gi\|28204650, gi\|... - gi\|28212206\|ref\|NP_783150.1\| rubrerythrin [Clostridium tetani E88], gi\|28204650\|gb\|AAO37087.1\| rubre...	198.0	[0..2]	[190..3]
gi\|77546023, gi\|... - gi\|77919940\|ref\|YP_357755.1\| rubrerythrin [Pelobacter carbinolicus DSM 2380], gi\|77546023\|gb\|ABA8958...	197.0	[0..1]	[190..1]
gi\|93454725, gi\|... - gi\|94264844\|ref\|ZP_01288620.1\| Rubrerythrin:Rubredoxin-type Fe(Cys)4 protein [delta proteobacterium ...	197.0	[0..3]	[190..47]
gi\|118580382, gi... - gi\|71838354\|ref\|ZP_00678114.1\| Rubrerythrin [Pelobacter propionicus DSM 2379], gi\|71741255\|gb\|EAO364...	197.0	[0..2]	[190..3]
gi\|68184321, gi\|... - gi\|91774289\|ref\|YP_566981.1\| rubrerythrin [Methanococcoides burtonii DSM 6242], gi\|91713304\|gb\|ABE53...	197.0	[0..3]	[190..4]
gi\|88602592, gi\|... - gi\|88602592\|ref\|YP_502770.1\| rubrerythrin [Methanospirillum hungatei JF-1], gi\|88188054\|gb\|ABD41051....	194.0	[0..1]	[190..1]
gi\|78193142, gi\|... - gi\|78221887\|ref\|YP_383634.1\| rubrerythrin [Geobacter metallireducens GS-15], gi\|78193142\|gb\|ABB30909...	192.0	[0..2]	[190..3]
gi\|95931114, gi\|... - gi\|95931114\|ref\|ZP_01313840.1\| Rubrerythrin [Desulfuromonas acetoxidans DSM 684], gi\|95132859\|gb\|EAT...	192.0	[0..2]	[190..4]
RUBY1_CLOAB - Rubrerythrin-1 OS=Clostridium acetobutylicum GN=rbr1 PE=1 SV=1 RUBY1_CLOAB - Rubrerythrin-1 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM ...	192.0	[0..2]	[190..3]

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Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLKGTKTEQ NLLKSFAGES QARNRYTYFA AAARKEGYVQ IADIFEETAN QEKEHAKRFF  60
   61 KFLEGGDLEI TACFPSGKIG TTAENLLAAA MGEHEEHSDL YPAFAQVAQE EGFPAIAAVW 120
  121 RAISVAEKQH EKRYRDLLAN IENNRVFTRE GEVVWRCRNC GYLHTAAGAP ELCPACAHPK 180
  181 AHFELLGENW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.69897
Match:	1rytA
Description:	RUBRERYTHRIN
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
superoxide dismutase activity	0.965308156844803	bayes_pls_golite062009
oxidoreductase activity, acting on superoxide radicals as acceptor	0.965308156844803	bayes_pls_golite062009
binding	0.384332331442434	bayes_pls_golite062009
catalytic activity	0.176396048613815	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: