YRC Public Data Repository - Protein Structure Prediction

Protein:	NADD_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NADD_GEOSL.

Description	E-value	Query Range	Subject Range
gi\|21325123, gi\|... - gi\|62391195\|ref\|YP_226597.1\| nicotinic acid mononucleotide adenylyltransferase [Corynebacterium glut...	209.0	[0..2]	[216..18]
NADD_GEOMG - Probable nicotinate-nucleotide adenylyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC...	207.0	[0..1]	[215..1]
gi\|54014851, gi\|... - gi\|54023343\|ref\|YP_117585.1\| nicotinic acid mononucleotide adenylyltransferase [Nocardia farcinica I...	204.0	[0..2]	[215..19]
gi\|85667579 - gi\|85667579\|ref\|ZP_01029796.1\| hypothetical protein Badol_01000066 [Bifidobacterium adolescentis]	202.0	[0..1]	[213..57]
gi\|224287172, gi... - gi\|239622200\|ref\|ZP_04665231.1\| nicotinic acid mononucleotide adenyltransferase [Bifidobacterium lon... gi\|189439645, gi... - gi\|189439645\|ref\|YP_001954726.1\| nicotinic acid mononucleotide adenylyltransferase [Bifidobacterium ... gi\|227546197, gi... - gi\|227546197\|ref\|ZP_03976246.1\| nicotinic acid mononucleotide adenylyltransferase [Bifidobacterium l... gi\|23465598, gi\|... - gi\|23465598\|ref\|NP_696201.1\| nicotinic acid mononucleotide adenylyltransferase [Bifidobacterium long...	201.0	[0..1]	[215..67]
gi\|6714685, gi\|2... - gi\|6714685\|emb\|CAB66257.1\| putative nicotinate-nucleotide adenylyltransferase [Streptomyces coelicol...	200.0	[0..2]	[215..47]
NADD_COREF - Probable nicotinate-nucleotide adenylyltransferase OS=Corynebacterium efficiens (strain DSM 44549 / ... NADD_COREF - Probable nicotinate-nucleotide adenylyltransferase OS=Corynebacterium efficiens GN=nadD PE=3 SV=2	200.0	[0..2]	[213..11]
gi\|25028813, gi\|... - gi\|25028813\|ref\|NP_738867.1\| nicotinic acid mononucleotide adenylyltransferase [Corynebacterium effi...	200.0	[0..2]	[213..26]
gi\|46191084 - gi\|46191084\|ref\|ZP_00206668.1\| COG1057: Nicotinic acid mononucleotide adenylyltransferase [Bifidobac...	199.0	[0..1]	[215..48]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTGILGGTF NPVHVAHLRI AEEVRDTFAL DRVLFIPAAS PPHKAMEGEV PFETRCAMVR  60
   61 LATADNHAFA VSDMEGGRPG KSYSVDTIRA LKEEYPGDEF FFIIGSDSFL DIGSWYDYEA 120
  121 IFASCNLVVA ARPGAEAADL LAALPVAITA QFCYYPAEKR LAHRSGYSVY WLAGVPLDIS 180
  181 SRSIRGLARL GRSIRYLVPE AVERYINEQR IYAHDG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.045757
Match:	1yulA
Description:	Crystal Structure of Nicotinic Acid Mononucleotide Adenylyltransferase from Pseudomonas aeruginosa
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits