YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39985338, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39985338, gi|....

Description	E-value	Query Range	Subject Range
gi\|20807674, gi\|... - gi\|20807674\|ref\|NP_622845.1\| lactoylglutathione lyase and related lyase [Thermoanaerobacter tengcong... gi\|20807674 - gi\|20807674\|ref\|NP_622845.1\| Lactoylglutathione lyase and related lyase [Thermoanaerobacter tengcong...	127.0	[0..1]	[133..1]
gi\|53763628, gi\|... - gi\|75906364\|ref\|YP_320660.1\| glyoxalase I [Anabaena variabilis ATCC 29413], gi\|75700089\|gb\|ABA19765....	124.0	[0..3]	[131..1]
gi\|98661946 - gi\|98661946\|dbj\|GAA01143.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	123.0	[0..1]	[133..22]
gi\|71669193, gi\|... - gi\|71677562\|ref\|ZP_00675298.1\| Glyoxalase I [Trichodesmium erythraeum IMS101], gi\|71669193\|gb\|EAO258...	123.0	[0..3]	[131..1]
gi\|186466114, gi... - gi\|23128141\|ref\|ZP_00109995.1\| COG0346: Lactoylglutathione lyase and related lyases [Nostoc punctifo...	123.0	[0..3]	[133..1]
gi\|237503531, gi... - gi\|237810899\|ref\|YP_002895350.1\| lactoylglutathione lyase (Methylglyoxalase)(Aldoketomutase) (Glyoxa... gi\|76809246, gi\|... - gi\|76809246\|ref\|YP_332289.1\| lactoylglutathione lyase [Burkholderia pseudomallei 1710b], gi\|76578699...	122.0	[0..2]	[132..109]
gi\|77685494, gi\|... - gi\|77685494\|ref\|ZP_00800891.1\| Glyoxalase/bleomycin resistance protein/dioxygenase [Alkaliphilus met...	122.0	[0..2]	[132..3]
gi\|25529923 - pir\|\|AB2096 lactoylglutathione lyase [imported] - Nostoc sp. (strain PCC 7120) gi\|17229813, gi\|... - gi\|17229813\|ref\|NP_486361.1\| lactoylglutathione lyase [Nostoc sp. PCC 7120], gi\|17131413\|dbj\|BAB7402...	122.0	[0..3]	[131..1]
gi\|15602852, gi\|... - gi\|15602852\|ref\|NP_245924.1\| hypothetical protein PM0987 [Pasteurella multocida subsp. multocida str... tr\|J6CVB7\|J6CVB7... - Lactoylglutathione lyase OS=Pasteurella multocida subsp. multocida str. Anand1_cattle GN=AAUPMC_1045...	121.0	[0..3]	[134..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSKINHIGI AVTSLDAAVP FYRDNLGMAF TGTEEVAEQK VRVAFFQIGE TKIELLEPTA  60
   61 EDSPIAKFLE KNGNGIHHIA YEVDDIEAAI AKLVADGARM IDSSPRNGAH GARIAFVHPK 120
  121 SSGGVLTELC QSGH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.39794
Match:	1jc4A
Description:	Methylmalonyl-CoA epimerase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.58822083914233	bayes_pls_golite062009
methylmalonyl-CoA epimerase activity	0.634998966787841	bayes_pls_golite062009
lyase activity	0.06622411219947	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: