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View Structure Prediction Details

Protein: PDXS_THET2
Organism: Thermus thermophilus HB27
Length: 293 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDXS_THET2.

Description E-value Query
Range
Subject
Range
PDXS_HERA2 - Pyridoxal 5'-phosphate synthase subunit PdxS OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 7...
430.0 [0..1] [293..1]

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Predicted Domain #1
Region A:
Residues: [1-293]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKGTFHIKT GFAEMFKGGV IMDVTTPEQA VIAEEAGAVA VMALERVPAD IRAQGGVARM  60
   61 SDPKIIKEIM AAVSIPVMAK VRIGHFVEAM ILEAIGVDFI DESEVLTPAD EEHHIDKWKF 120
  121 KVPFVCGARN LGEALRRIAE GAAMIRTKGE AGTGNVVEAV RHARTMWKEI RYVQSLREDE 180
  181 LMAYAKEIGA PFELVKWVHD HGRLPVVNFA AGGIATPADA ALMMHLGMDG VFVGSGIFKS 240
  241 GDPRKRARAI VRAVAHYNDP EVLAEVSEDL GEPMVGINLD QLKEEERLAK RGW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 113.0
Match: 1znnA
Description: Structure of the synthase subunit of PLP synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 2.44231061702877 bayes_pls_golite062009
ribulose-phosphate 3-epimerase activity 1.56591581078504 bayes_pls_golite062009
binding 0.283052085721618 bayes_pls_golite062009
racemase and epimerase activity, acting on carbohydrates and derivatives 0.21095259308705 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle