YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|46448689, gi\|...
Organism:	Desulfovibrio vulgaris str. Hildenborough
Length:	301 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46448689, gi|....

Description	E-value	Query Range	Subject Range
gi\|4092885, gi\|7... - pir\|\|T31436 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Nosema locustae, gi\|4092885\|...	3.0E-40	[34..265]	[1326..1534]
gi\|3511287, gi\|7... - pir\|\|T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...	1.0E-39	[23..300]	[1333..1658]
gi\|54291834, gi\|... - gi\|54291834\|gb\|AAV32202.1\| putative RNA polymerase II [Oryza sativa Japonica Group], gi\|50949135\|ref...	1.0E-36	[24..279]	[1343..1607]
gi\|40746483, gi\|... - gi\|67517057\|ref\|XP_658413.1\| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	1.0E-35	[23..300]	[1400..1743]
gi\|83767526, gi\|... - gi\|9955855\|dbj\|BAB12227.1\| RNA polymerase II largest subunit [Aspergillus oryzae], gi\|83767526\|dbj\|B... gi\|169770395 - gi\|169770395\|ref\|XP_001819667.1\| hypothetical protein [Aspergillus oryzae RIB40]	3.0E-34	[33..300]	[1415..1746]
gi\|111060144 - gi\|111060144\|gb\|EAT81264.1\| hypothetical protein SNOG_11556 [Phaeosphaeria nodorum SN15]	5.0E-34	[23..301]	[907..1245]
gi\|68473217, gi\|... - gi\|68473217\|ref\|XP_719414.1\| hypothetical protein CaO19.7655 [Candida albicans SC5314], gi\|46441230\|... orf19.7655 - RPO21 CGDID:CAL0000919 Assembly 19, Contig19-2518 (190144, 195330) CDS, translated using codon table...	2.0E-33	[23..284]	[1376..1723]
gi\|120603163, gi... - gi\|120603163\|ref\|YP_967563.1\| flagellar protein FliS [Desulfovibrio vulgaris subsp. vulgaris DP4], g...	2.0E-32	[1..301]	[1..301]
gi\|12642612 - gi\|12642612\|gb\|AAK00310.1\|AF315820_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Glaucosph...	3.0E-32	[23..258]	[1400..1675]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHKAAQAYLQ TQVTTTSQGE LLLLLYDGAI KFLTQAKERM AARDMAGKGV LISKALDVIN  60
   61 ELDSSLNAEK GGELADNLHK LYFYCSTRLL SANLKLDPNL IDEVIKVLSG LRGAYAQIVN 120
  121 TPEAQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.522879
Match:	1vh6A
Description:	Crystal structure of a flagellar protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.31438572337508	bayes_pls_golite062009
protein binding	0.977368420595996	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [127-301]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAADVAARQS PASAMPQRGA PVMPGLPRPP AGFAARAQAN AAYGQTTPQA PAAAGVAFER  60
   61 PVMPPPAHVA PSAVQEATRP APQTGAPAAP GGPAAHGQTP PPAAAHGTLP FASPGGQTTT 120
  121 APAPPAAPSA PSKQAVPTGQ ADHAGHTVPD GQGIPGGFAN KRLAASNLYR KLSQG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.3
Match:	2j63A
Description:	No description for 2j63A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: