YRC Public Data Repository - Protein Structure Prediction

Protein:	RNPA_LISMF
Organism:	Listeria monocytogenes serotype 4b str. F2365
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNPA_LISMF.

Description	E-value	Query Range	Subject Range
RNPA_BACHD - Ribonuclease P protein component OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344... RNPA_BACHD - Ribonuclease P protein component OS=Bacillus halodurans GN=rnpA PE=3 SV=1	129.0	[0..1]	[119..1]
RNPA_OCEIH - Ribonuclease P protein component OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 39... RNPA_OCEIH - Ribonuclease P protein component OS=Oceanobacillus iheyensis GN=rnpA PE=3 SV=1	127.0	[0..1]	[118..1]
RNPA_GEOKA - Ribonuclease P protein component OS=Geobacillus kaustophilus (strain HTA426) GN=rnpA PE=3 SV=1 gi\|229331359, gi... - gi\|229497933\|ref\|ZP_04391632.1\| ribonuclease P protein component [Geobacillus sp. Y412MC52], gi\|2293... RNPA_GEOKA - Ribonuclease P protein component OS=Geobacillus kaustophilus GN=rnpA PE=3 SV=1	127.0	[0..1]	[118..1]
RNPA_LISIN - Ribonuclease P protein component OS=Listeria innocua GN=rnpA PE=3 SV=1 RNPA_LISIN - Ribonuclease P protein component OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=rnpA PE=3 SV=...	127.0	[0..1]	[119..1]
gi\|228936767, gi... - gi\|228936767\|ref\|ZP_04099558.1\| Ribonuclease P protein component [Bacillus thuringiensis serovar and... gi\|228829212, gi... - gi\|228930493\|ref\|ZP_04093493.1\| Ribonuclease P protein component [Bacillus thuringiensis serovar pon... gi\|229094598, gi... - gi\|229094598\|ref\|ZP_04225665.1\| Ribonuclease P protein component [Bacillus cereus Rock3-42], gi\|2286... gi\|228949209, gi... - gi\|228949209\|ref\|ZP_04111477.1\| Ribonuclease P protein component [Bacillus thuringiensis serovar mon... gi\|229187716, gi... - gi\|229187716\|ref\|ZP_04314852.1\| Ribonuclease P protein component [Bacillus cereus BGSC 6E1], gi\|2285... gi\|229124990, gi... - gi\|229124990\|ref\|ZP_04254164.1\| Ribonuclease P protein component [Bacillus cereus 95/8201], gi\|22865... gi\|118480514, gi... - gi\|118480514\|ref\|YP_897665.1\| ribonuclease P [Bacillus thuringiensis str. Al Hakam], gi\|118419739\|gb... gi\|65317468 - gi\|65317468\|ref\|ZP_00390427.1\| COG0594: RNase P protein component [Bacillus anthracis str. A2012] gi\|228918099, gi... - gi\|228918099\|ref\|ZP_04081627.1\| Ribonuclease P protein component [Bacillus thuringiensis serovar pul...	126.0	[0..1]	[119..5]
RNPA_BACCN - Ribonuclease P protein component OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / N...	126.0	[0..1]	[110..1]
RNPA_BACC1 - Ribonuclease P protein component OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=rnpA PE=3 SV=1	125.0	[0..1]	[115..1]
gi\|228629832, gi... - gi\|229153646\|ref\|ZP_04281822.1\| Ribonuclease P protein component [Bacillus cereus m1550], gi\|2286298... gi\|228589763, gi... - gi\|229193738\|ref\|ZP_04320679.1\| Ribonuclease P protein component [Bacillus cereus ATCC 10876], gi\|22... RNPA_BACCR - Ribonuclease P protein component OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15... gi\|228670579, gi... - gi\|229112900\|ref\|ZP_04242431.1\| Ribonuclease P protein component [Bacillus cereus Rock1-15], gi\|2286... gi\|229130733, gi... - gi\|229130733\|ref\|ZP_04259686.1\| Ribonuclease P protein component [Bacillus cereus BDRD-Cer4], gi\|228... gi\|228797945, gi... - gi\|228961751\|ref\|ZP_04123354.1\| Ribonuclease P protein component [Bacillus thuringiensis serovar pak... gi\|228722219, gi... - gi\|229051156\|ref\|ZP_04194700.1\| Ribonuclease P protein component [Bacillus cereus AH676], gi\|2287222...	125.0	[0..1]	[115..5]
gi\|228911327, gi... - gi\|228911327\|ref\|ZP_04075131.1\| Ribonuclease P protein component [Bacillus thuringiensis IBL 200], g... gi\|228905431, gi... - gi\|228905431\|ref\|ZP_04069386.1\| Ribonuclease P protein component [Bacillus thuringiensis IBL 4222], ... gi\|228803965, gi... - gi\|228955737\|ref\|ZP_04117732.1\| Ribonuclease P protein component [Bacillus thuringiensis serovar kur... gi\|228817062, gi... - gi\|228942636\|ref\|ZP_04105168.1\| Ribonuclease P protein component [Bacillus thuringiensis serovar ber... gi\|228784176, gi... - gi\|228975566\|ref\|ZP_04136118.1\| Ribonuclease P protein component [Bacillus thuringiensis serovar thu... gi\|75765125, gi\|... - gi\|75765125\|ref\|ZP_00744402.1\| Ribonuclease P protein component [Bacillus thuringiensis serovar isra... gi\|228791068, gi... - gi\|228968639\|ref\|ZP_04129622.1\| Ribonuclease P protein component [Bacillus thuringiensis serovar sot... gi\|229072952, gi... - gi\|229072952\|ref\|ZP_04206148.1\| Ribonuclease P protein component [Bacillus cereus F65185], gi\|228710... gi\|228982202, gi... - gi\|228982202\|ref\|ZP_04142491.1\| Ribonuclease P protein component [Bacillus thuringiensis Bt407], gi\|...	125.0	[0..1]	[115..5]
RNPA_BACCQ - Ribonuclease P protein component OS=Bacillus cereus (strain Q1) GN=rnpA PE=3 SV=1 gi\|47568686, gi\|... - gi\|47568686\|ref\|ZP_00239383.1\| ribonuclease P protein component [Bacillus cereus G9241], gi\|47554674...	124.0	[0..1]	[115..1]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKYRIKKN DDFQKVFRRG KSFANRQFVV YTLKQEGSNH FRIGLSVSKK IGNAVCRNRI  60
   61 KRYIRQSFHE LESQINPENE YIIIARKPAA NMDFHEVKKS LIHVLKVGRV LKQKPNNSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	1d6tA
Description:	RNase P protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
tRNA-specific ribonuclease activity	6.1454778021122	bayes_pls_golite062009
ribonuclease P activity	5.34408239201797	bayes_pls_golite062009
structural constituent of ribosome	3.49304472389303	bayes_pls_golite062009
RNA binding	2.94550290381601	bayes_pls_golite062009
structural molecule activity	2.91017901273919	bayes_pls_golite062009
3'-5'-exoribonuclease activity	2.16830676862423	bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters	1.94887328847363	bayes_pls_golite062009
exoribonuclease activity	1.90081280972069	bayes_pls_golite062009
mRNA binding	1.42024615739664	bayes_pls_golite062009
ribonuclease activity	1.31550811238109	bayes_pls_golite062009
transcription regulator activity	1.20748032530392	bayes_pls_golite062009
nucleic acid binding	1.05662964529454	bayes_pls_golite062009
binding	0.907487229190259	bayes_pls_golite062009
catalytic activity	0.878454819018611	bayes_pls_golite062009
DNA binding	0.828609700556836	bayes_pls_golite062009
nuclease activity	0.69721312877891	bayes_pls_golite062009
3'-5' exonuclease activity	0.477960254167	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: