YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260199, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	375 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260199, gi|....

Description	E-value	Query Range	Subject Range
RECF_GEOKA - DNA replication and repair protein recF OS=Geobacillus kaustophilus GN=recF PE=3 SV=1 RECF_GEOKA - DNA replication and repair protein RecF OS=Geobacillus kaustophilus (strain HTA426) GN=recF PE=3 SV=...	2.0E-55	[1..369]	[1..369]
RECF_BACLD - DNA replication and repair protein RecF OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM ...	8.0E-55	[1..369]	[1..369]
RECF_BACHD - DNA replication and repair protein RecF OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FE... RECF_BACHD - DNA replication and repair protein recF OS=Bacillus halodurans GN=recF PE=3 SV=1	1.0E-54	[1..370]	[1..369]
RECF_LACBA - DNA replication and repair protein RecF OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=recF...	4.0E-54	[1..368]	[1..368]
gi\|229199684, gi... - gi\|229199684\|ref\|ZP_04326327.1\| DNA replication and repair protein recF [Bacillus cereus m1293], gi\|... RECF_BACHK - DNA replication and repair protein RecF OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN... RECF_BACCQ - DNA replication and repair protein RecF OS=Bacillus cereus (strain Q1) GN=recF PE=3 SV=1 RECF_BACC7 - DNA replication and repair protein RecF OS=Bacillus cereus (strain AH187) GN=recF PE=3 SV=1 gi\|196041944, gi... - gi\|196041944\|ref\|ZP_03109231.1\| DNA replication and repair protein RecF [Bacillus cereus NVH0597-99]... gi\|206745934, gi... - gi\|206975840\|ref\|ZP_03236751.1\| DNA replication and repair protein RecF [Bacillus cereus H3081.97], ... RECF_BACHK - DNA replication and repair protein recF OS=Bacillus thuringiensis subsp. konkukian GN=recF PE=3 SV=1 gi\|196023761, gi... - gi\|196045554\|ref\|ZP_03112785.1\| DNA replication and repair protein RecF [Bacillus cereus 03BB108], g... RECF_BACC1 - DNA replication and repair protein RecF OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=recF PE=... RECF_BACAH - DNA replication and repair protein RecF OS=Bacillus thuringiensis (strain Al Hakam) GN=recF PE=3 SV=... gi\|228930498, gi... - gi\|228930498\|ref\|ZP_04093498.1\| DNA replication and repair protein recF [Bacillus thuringiensis sero... gi\|228931510, gi... - gi\|228931510\|ref\|ZP_04094420.1\| DNA replication and repair protein recF [Bacillus thuringiensis sero... RECF_BACC3 - DNA replication and repair protein RecF OS=Bacillus cereus (strain 03BB102) GN=recF PE=3 SV=1 gi\|228841584, gi... - gi\|228918104\|ref\|ZP_04081632.1\| DNA replication and repair protein recF [Bacillus thuringiensis sero... gi\|229142241, gi... - gi\|229142241\|ref\|ZP_04270765.1\| DNA replication and repair protein recF [Bacillus cereus BDRD-ST26],... gi\|229187721, gi... - gi\|229187721\|ref\|ZP_04314857.1\| DNA replication and repair protein recF [Bacillus cereus BGSC 6E1], ... gi\|228988721, gi... - gi\|228988721\|ref\|ZP_04148806.1\| DNA replication and repair protein recF [Bacillus thuringiensis sero... gi\|229124995, gi... - gi\|229124995\|ref\|ZP_04254169.1\| DNA replication and repair protein recF [Bacillus cereus 95/8201], g...	2.0E-53	[1..375]	[1..375]
gi\|228905436, gi... - gi\|228905436\|ref\|ZP_04069391.1\| DNA replication and repair protein recF [Bacillus thuringiensis IBL ... gi\|228968645, gi... - gi\|228968645\|ref\|ZP_04129628.1\| DNA replication and repair protein recF [Bacillus thuringiensis sero... gi\|74490723, gi\|... - gi\|75761790\|ref\|ZP_00741725.1\| DNA replication and repair protein recF [Bacillus thuringiensis serov... RECF_BACC2 - DNA replication and repair protein RecF OS=Bacillus cereus (strain G9842) GN=recF PE=3 SV=1	5.0E-53	[1..375]	[1..375]
RECF_BACSU - DNA replication and repair protein recF OS=Bacillus subtilis GN=recF PE=3 SV=2 gi\|221321331 - gi\|221321331\|ref\|ZP_03602625.1\| recombination protein F [Bacillus subtilis subsp. subtilis str. SMY] gi\|221317068 - gi\|221317068\|ref\|ZP_03598362.1\| recombination protein F [Bacillus subtilis subsp. subtilis str. JH64... RECF_BACSU - DNA replication and repair protein RecF OS=Bacillus subtilis (strain 168) GN=recF PE=3 SV=2 gi\|221312135 - gi\|221312135\|ref\|ZP_03593940.1\| recombination protein F [Bacillus subtilis subsp. subtilis str. NCIB...	5.0E-53	[1..368]	[1..368]
RECF_BACSK - DNA replication and repair protein RecF OS=Bacillus clausii (strain KSM-K16) GN=recF PE=3 SV=1	9.0E-53	[1..370]	[1..370]
gi\|227854321, gi... - gi\|227897418\|ref\|ZP_04015223.1\| recombination protein F [Lactobacillus plantarum subsp. plantarum AT... gi\|254555173, gi... - gi\|254555173\|ref\|YP_003061590.1\| recombination protein F [Lactobacillus plantarum JDM1], gi\|25404410... RECF_LACPL - DNA replication and repair protein recF OS=Lactobacillus plantarum GN=recF PE=3 SV=1 RECF_LACPL - DNA replication and repair protein RecF OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826...	1.0E-52	[1..372]	[1..372]
RECF_BACWK - DNA replication and repair protein RecF OS=Bacillus weihenstephanensis (strain KBAB4) GN=recF PE=3 S... gi\|228647190, gi... - gi\|229136318\|ref\|ZP_04265065.1\| DNA replication and repair protein recF [Bacillus cereus BDRD-ST196]...	1.0E-52	[1..374]	[1..374]

Back

Predicted Domain #1

Region A:
Residues: [1-375]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFISEIQLKN YRNYEKLELS FEDKVNVIIG ENAQGKTNLM EAIYVLAMAK SHRTSNDREL  60
   61 IRWDEDFGQI KGKLQKRNSS LSLELNISKK GKKAKLNQLE QQKLSQYIGV MNVVMFAPED 120
  121 LNLVKGSPQV RRRFLDMELG QIAPVYLYEL SQYQKVLTQR NHLLKKMQGN SKNEETMLDV 180
  181 FTLQLIEHGT KILRKRFEFL HLLQEWAAPI HRGISRGLEE LEIVYKPSVD VSESMDLSKI 240
  241 KEVYYESFQS VKQREIFRGT TLIGPHRDDL QFFVNSKNVQ VFGSQGQQRT TALSLKLAEI 300
  301 ELIYSEVKEY PILLLDDVLS ELDDYRQSHL LNTIQGKVQT FVTTTSVDGI EHETLKEAKT 360
  361 IHVTNGTVDC EIDRA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	2o5vA
Description:	No description for 2o5vA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits