YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30253614, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	1177 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30253614, gi|....

Description	E-value	Query Range	Subject Range
gi\|196026835, gi... - gi\|196042329\|ref\|ZP_03109604.1\| DNA-directed RNA polymerase, beta subunit [Bacillus cereus NVH0597-9... gi\|196036937, gi... - gi\|196036937\|ref\|ZP_03104318.1\| DNA-directed RNA polymerase, beta subunit [Bacillus cereus W], gi\|19... RPOB_BACCQ - DNA-directed RNA polymerase subunit beta OS=Bacillus cereus (strain Q1) GN=rpoB PE=3 SV=1 RPOB_BACC7 - DNA-directed RNA polymerase subunit beta OS=Bacillus cereus (strain AH187) GN=rpoB PE=3 SV=1 RPOB_BACCZ - DNA-directed RNA polymerase subunit beta OS=Bacillus cereus (strain ZK / E33L) GN=rpoB PE=3 SV=1 RPOB_BACAH - DNA-directed RNA polymerase subunit beta OS=Bacillus thuringiensis (strain Al Hakam) GN=rpoB PE=3 SV... RPOB_BACC3 - DNA-directed RNA polymerase subunit beta OS=Bacillus cereus (strain 03BB102) GN=rpoB PE=3 SV=1 gi\|254720823 - gi\|254720823\|ref\|ZP_05182615.1\| DNA-directed RNA polymerase subunit beta [Bacillus anthracis str. A1... RPOB_BACC1 - DNA-directed RNA polymerase subunit beta OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=rpoB PE... RPOB_BACHK - DNA-directed RNA polymerase subunit beta OS=Bacillus thuringiensis subsp. konkukian GN=rpoB PE=3 SV=... RPOB_BACHK - DNA-directed RNA polymerase subunit beta OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) G...	0.0	[1..1177]	[1..1177]
gi\|47570395, gi\|... - gi\|47570395\|ref\|ZP_00241035.1\| DNA-directed RNA polymerase, beta subunit [Bacillus cereus G9241], gi...	0.0	[1..1177]	[1..1177]
gi\|228963202, gi... - gi\|228963202\|ref\|ZP_04124371.1\| DNA-directed RNA polymerase subunit beta [Bacillus thuringiensis ser... RPOB_BACCR - DNA-directed RNA polymerase subunit beta OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 /... RPOB_BACC2 - DNA-directed RNA polymerase subunit beta OS=Bacillus cereus (strain G9842) GN=rpoB PE=3 SV=1 RPOB_BACC4 - DNA-directed RNA polymerase subunit beta OS=Bacillus cereus (strain B4264) GN=rpoB PE=3 SV=1 gi\|206972219, gi... - gi\|206972219\|ref\|ZP_03233166.1\| DNA-directed RNA polymerase, beta subunit [Bacillus cereus AH1134], ...	0.0	[1..1177]	[1..1177]
RPOB_BACWK - DNA-directed RNA polymerase subunit beta OS=Bacillus weihenstephanensis (strain KBAB4) GN=rpoB PE=3 ...	0.0	[1..1177]	[1..1177]
gi\|65317559 - gi\|65317559\|ref\|ZP_00390518.1\| COG0085: DNA-directed RNA polymerase, beta subunit/140 kD subunit [Ba...	0.0	[1..1177]	[4..1180]
RPOB_BACLD - DNA-directed RNA polymerase subunit beta OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM...	0.0	[1..1177]	[1..1179]
gi\|2632374, gi\|1... - gi\|2632374\|emb\|CAB11883.1\| RNA polymerase (beta subunit) [Bacillus subtilis subsp. subtilis str. 168... RPOB_BACSU - DNA-directed RNA polymerase subunit beta OS=Bacillus subtilis GN=rpoB PE=1 SV=1	0.0	[1..1177]	[1..1178]
RPOB_GEOKA - DNA-directed RNA polymerase subunit beta OS=Geobacillus kaustophilus GN=rpoB PE=3 SV=1 gi\|229499922, gi... - gi\|229499922\|ref\|ZP_04393599.1\| DNA-directed RNA polymerase, beta subunit [Geobacillus sp. Y412MC52]... RPOB_GEOKA - DNA-directed RNA polymerase subunit beta OS=Geobacillus kaustophilus (strain HTA426) GN=rpoB PE=3 SV... gi\|221089314, gi... - gi\|221089314\|ref\|ZP_03558834.1\| DNA-directed RNA polymerase, beta subunit [Geobacillus sp. Y412MC61]...	0.0	[1..1155]	[1..1156]
RPOB_BACSK - DNA-directed RNA polymerase subunit beta OS=Bacillus clausii (strain KSM-K16) GN=rpoB PE=3 SV=1	0.0	[1..1176]	[1..1177]
RPOB_LISIN - DNA-directed RNA polymerase subunit beta OS=Listeria innocua GN=rpoB PE=3 SV=1 RPOB_LISIN - DNA-directed RNA polymerase subunit beta OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=rpoB ...	0.0	[2..1170]	[5..1172]

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Predicted Domain #1

Region A:
Residues: [1-165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGQLVQYGR HRQRRSYARI SEVLELPNLI EIQTSSYQWF LDEGLREMFQ DISPIEDFTG  60
   61 NLSLEFIDYS LGEPKYSVDE CKERDVTYAA PLRVKVRLIN KETGEVKEQD VFMGDFPLMT 120
  121 ETGTFVINGA ERVIVSQLVR SPSVYYSGKV DKNGKRGFTA TVIPN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	24.79588
Match:	PF04563.6
Description:	No description for PF04563.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [166-1177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGAWLEYETD AKDVVYVRID RTRKLPVTVL LRALGFGSDQ EITELLGDNE YLSNTLEKDN  60
   61 TDSTEKALLE IYERLRPGEP PTVENAKSLL VSRFFDPKRY DLANVGRYKI NKKLHIKNRL 120
  121 FNQRLAETLV DPETGEILAA EGTILDRRTL DRILPYLEKN IGFKTAKPMG GVVEGDVELQ 180
  181 SIKIYAPESE GERVINVIGN ANITRDVKHI TPGDILASIS YFFNLLYKVG DTDDIDHLGN 240
  241 RRLRSVGELL QNQFRIGLSR MERVVRERMS IQDTNAITPQ ALINIRPVIA AIKEFFGSSQ 300
  301 LSQFMDQTNP LAELTHKRRL SALGPGGLTR ERAGFEVRDV HYSHYGRMCP IETPEGPNIG 360
  361 LINSLSSFAK VNEFGFIETP YRRVDPETGL VTGHVDYLTA DEEDNYVVAQ ANMKLSEEGE 420
  421 FLDEDIVARF RGENIVTNKE RIDYMDVSPK QVVSAATACI PFLENDDSNR ALMGANMQRQ 480
  481 AVPLMNPESP IVGTGMEYVS AKDSGAAVIC KHPGIVERVE AREVWVRRYV EVDGQTVKGD 540
  541 LDRYKMQKFI RSNQGTCYNQ RPIVSVGNEV VKGEILADGP SMELGELALG RNVLVGFMTW 600
  601 DGYNYEDAII MSERLVKDDV YTSIHIEEYE SEARDTKLGP EEITRDIPNV GEDALRNLDE 660
  661 RGIIRVGAEV KDGDLLVGKV TPKGVTELTA EERLLHAIFG EKAREVRDTS LRVPHGGGGI 720
  721 ILDVKVFNRE DGDELPPGVN QLVRAYIVQK RKISEGDKMA GRHGNKGVIS RILPEEDMPY 780
  781 LPDGTPIDIM LNPLGVPSRM NIGQVLELHL GMAARYLGIH IATPVFDGAR EEDVWGTIEE 840
  841 AGMANDAKTI LYDGRTGEPF DNRVSVGVMY MIKLAHMVDD KLHARSTGPY SLVTQQPLGG 900
  901 KAQFGGQRFG EMEVWALEAY GAAYTLQEIL TVKSDDVIGR VKTYEAIVKG ENVPEPGVPE 960
  961 SFKVLIKELQ SLGMDVKMMS SDDTEIEMRD TEDDDDHQSA DKLNVEVETT KE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1l9uC
Description:	DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits