YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260336, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260336, gi|....

Description	E-value	Query Range	Subject Range
gi\|229067911, gi... - gi\|229067911\|ref\|ZP_04201228.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus ce... gi\|228727348, gi... - gi\|229041051\|ref\|ZP_04189814.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus ce... gi\|29893955, gi\|... - gi\|30018415\|ref\|NP_830046.1\| spore-specific N-acetylmuramoyl-L-alanine amidase [Bacillus cereus ATCC... gi\|228782875, gi... - gi\|228976905\|ref\|ZP_04137317.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus th... gi\|228970335, gi... - gi\|228970335\|ref\|ZP_04130994.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus th... gi\|229142952, gi... - gi\|229142952\|ref\|ZP_04271393.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus ce... gi\|229125663, gi... - gi\|229125663\|ref\|ZP_04254695.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus ce... gi\|228675681, gi... - gi\|229107832\|ref\|ZP_04237468.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus ce... gi\|228705862, gi... - gi\|229077448\|ref\|ZP_04210096.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus ce... gi\|229188431, gi... - gi\|229188431\|ref\|ZP_04315479.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus ce... gi\|228606789, gi... - gi\|229176746\|ref\|ZP_04304150.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus ce... gi\|228634971, gi... - gi\|229148555\|ref\|ZP_04276811.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus ce... gi\|206732811, gi... - gi\|206972237\|ref\|ZP_03233184.1\| germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus ce... gi\|228803152, gi... - gi\|228956587\|ref\|ZP_04118383.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus th... gi\|218159242, gi... - gi\|218231285\|ref\|YP_002364995.1\| germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus c... gi\|228809045, gi... - gi\|228950694\|ref\|ZP_04112828.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus th... gi\|228937449, gi... - gi\|228937449\|ref\|ZP_04100095.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus th...	1.0E-70	[1..237]	[1..237]
gi\|254739472 - gi\|254739472\|ref\|ZP_05197170.1\| germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus an... gi\|254726275 - gi\|254726275\|ref\|ZP_05188057.1\| germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus an... gi\|118475913, gi... - gi\|118475913\|ref\|YP_893064.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus thuringiensis str. Al Hak... gi\|254686645 - gi\|254686645\|ref\|ZP_05150504.1\| germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus an... gi\|49330782, gi\|... - gi\|49479226\|ref\|YP_034497.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus thuringiensis serovar konk... gi\|52145064, gi\|... - gi\|52145064\|ref\|YP_081756.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus cereus E33L], gi\|51978533\|... gi\|42735142, gi\|... - gi\|42779227\|ref\|NP_976474.1\| germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus cereu... gi\|218537077, gi... - gi\|218901351\|ref\|YP_002449185.1\| germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus c... gi\|217065715, gi... - gi\|217957721\|ref\|YP_002336265.1\| germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus c... gi\|206978036, gi... - gi\|206978036\|ref\|ZP_03238921.1\| germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus ce... gi\|225862198, gi... - gi\|225862198\|ref\|YP_002747576.1\| germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus c... gi\|196046196, gi... - gi\|196046196\|ref\|ZP_03113423.1\| germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus ce... gi\|195991327, gi... - gi\|196035958\|ref\|ZP_03103359.1\| germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus ce... gi\|170689682, gi... - gi\|170689682\|ref\|ZP_02880860.1\| germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus an... gi\|167527850, gi... - gi\|167636718\|ref\|ZP_02395003.1\| germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus an... gi\|228943951, gi... - gi\|228943951\|ref\|ZP_04106336.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus th... gi\|228828076, gi... - gi\|228931648\|ref\|ZP_04094554.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus th... gi\|228834321, gi... - gi\|228925399\|ref\|ZP_04088495.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus th... gi\|228912885, gi... - gi\|228912885\|ref\|ZP_04076532.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus th... gi\|228600995, gi... - gi\|229182540\|ref\|ZP_04309791.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus ce... gi\|228629605, gi... - gi\|229153924\|ref\|ZP_04282054.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus ce... gi\|229119808, gi... - gi\|229119808\|ref\|ZP_04249069.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus ce... gi\|228694116, gi... - gi\|229089277\|ref\|ZP_04220558.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus ce...	2.0E-70	[1..237]	[1..237]
gi\|229053992, gi... - gi\|229053992\|ref\|ZP_04195426.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus ce... gi\|229009655, gi... - gi\|229009655\|ref\|ZP_04166881.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus my... gi\|228618397, gi... - gi\|229165134\|ref\|ZP_04292929.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus ce... gi\|229131154, gi... - gi\|229131154\|ref\|ZP_04260066.1\| Germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus ce... gi\|89153242, gi\|... - gi\|89208833\|ref\|ZP_01187317.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus weihenstephanensis KBAB4...	2.0E-70	[1..237]	[1..237]
gi\|47553082, gi\|... - gi\|47570258\|ref\|ZP_00240909.1\| spore-specific N-acetylmuramoyl-L-alanine amidase [Bacillus cereus G9...	4.0E-70	[1..237]	[1..237]
gi\|152022744, gi... - gi\|89203686\|ref\|ZP_01182294.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus cereus subsp. cytotoxis ...	1.0E-68	[1..237]	[1..237]
gi\|10172851, gi\|... - gi\|15612802\|ref\|NP_241105.1\| germination specific N-acetylmuramoyl-L-alanine amidase [Bacillus halod... gi\|25351143 - pir\|\|G83679 germination specific N-acetylmuramoyl-L-alanine amidase cwlD [imported] - Bacillus halod...	6.0E-68	[4..237]	[2..238]
gi\|56961974, gi\|... - gi\|56961974\|ref\|YP_173696.1\| germination-specific N-acetylmuramoyl-L-alanine amidase [Bacillus claus...	2.0E-66	[1..235]	[1..237]
gi\|52001858, gi\|... - gi\|52784009\|ref\|YP_089838.1\| CwlD [Bacillus licheniformis ATCC 14580], gi\|52346511\|gb\|AAU39145.1\| Cw...	9.0E-64	[2..237]	[3..237]
gi\|7470747 - pir\|\|S74823 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 3 - Synechocystis sp. (strain PCC 6803)... gi\|1652866, gi\|1... - gi\|1652866\|dbj\|BAA17784.1\| N-acetylmuramoyl-L-alanine amidase [Synechocystis sp. PCC 6803], gi\|16330...	6.0E-58	[20..232]	[454..649]
gi\|134298143, gi... - gi\|88944081\|ref\|ZP_01147414.1\| Cell wall hydrolase/autolysin [Desulfotomaculum reducens MI-1], gi\|88...	5.0E-57	[1..236]	[9..248]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRIRIISFA LAAVILFFLV KQEFQIIKSW RAWNLPLSGK VIVLDAGHGG PDGGAVGGKD  60
   61 IVEKDITLEI TKKVQDYLQE QGALVILTRE GDYDLAQKDT KSYSRRKAED LKKRVEIINK 120
  121 PDVDFFASIH LNALTSSGSK GAQTFYYRSS IENERAAKFI QAELRTSLEN TNRSAKTISH 180
  181 VYLLKYAKTP GALIEAGFLS NVNERYMLNS EKYQQKVAAA VYRGILRYFT EKGNPPE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.154902
Match:	1jwqA
Description:	Structure of the catalytic domain of CwlV, N-acetylmuramoyl-L-alanine amidase from Bacillus(Paenibacillus) polymyxa var.colistinus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	3.67722840912402	bayes_pls_golite062009
N-acetylmuramoyl-L-alanine amidase activity	3.0995594592309	bayes_pls_golite062009
peptidase activity	2.70319066310115	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	2.44249748878472	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	2.07011073073947	bayes_pls_golite062009
carboxypeptidase activity	1.95498314957158	bayes_pls_golite062009
catalytic activity	1.3989281287879	bayes_pls_golite062009
exopeptidase activity	0.606503700246216	bayes_pls_golite062009
binding	0.252136075715404	bayes_pls_golite062009
metallopeptidase activity	0.117214777864168	bayes_pls_golite062009
protein binding	0.0314733407355351	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: