YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260908, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	331 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260908, gi|....

Description	E-value	Query Range	Subject Range
gi\|89897223, gi\|... - gi\|89897223\|ref\|YP_520710.1\| hypothetical protein DSY4477 [Desulfitobacterium hafniense Y51], gi\|893... gi\|68168096, gi\|... - gi\|68208002\|ref\|ZP_00560141.1\| Spore germination B3 GerAC like, C-terminal [Desulfitobacterium hafni...	315.0	[0..1]	[330..35]
gi\|218232447, gi... - gi\|218232447\|ref\|YP_002365553.1\| spore germination protein, GerC family [Bacillus cereus B4264], gi\|... gi\|30018942, gi\|... - gi\|30018942\|ref\|NP_830573.1\| GerC family spore germination protein [Bacillus cereus ATCC 14579], gi\|...	301.0	[0..1]	[331..31]
gi\|49480302, gi\|... - gi\|49480302\|ref\|YP_035021.1\| spore germination protein (GerAC) [Bacillus thuringiensis serovar konku...	298.0	[0..1]	[331..30]
gi\|74491995, gi\|... - gi\|75760530\|ref\|ZP_00740566.1\| Spore germination protein, gerC family [Bacillus thuringiensis serova...	298.0	[0..1]	[331..25]
gi\|52144560, gi\|... - gi\|52144560\|ref\|YP_082269.1\| spore germination protein AC [Bacillus cereus E33L], gi\|51978029\|gb\|AAU...	296.0	[0..1]	[331..30]
gi\|47564698, gi\|... - gi\|47564698\|ref\|ZP_00235742.1\| spore germination protein, gerC family [Bacillus cereus G9241], gi\|47...	293.0	[0..1]	[331..30]
gi\|10174216, gi\|... - gi\|15614162\|ref\|NP_242465.1\| spore germination protein [Bacillus halodurans C-125], gi\|10174216\|dbj\|... gi\|25494769 - pir\|\|G83849 spore germination protein BH1599 [imported] - Bacillus halodurans (strain C-125)	289.0	[0..1]	[331..33]
gi\|3290177 - gi\|3290177\|gb\|AAD03543.1\| spore germination protein GerIC [Bacillus cereus] gi\|3290177\|gb\|AA... - spore germination protein GerIC [Bacillus cereus]	285.0	[0..1]	[331..33]
gi\|190560634, gi... - gi\|190568378\|ref\|ZP_03021286.1\| spore germination protein GerHC [Bacillus anthracis Tsiankovskii-I],... gi\|227005961, gi... - gi\|227817528\|ref\|YP_002817537.1\| spore germination protein GerHC [Bacillus anthracis str. CDC 684], ... gi\|229267920, gi... - gi\|229603512\|ref\|YP_002869011.1\| spore germination protein GerHC [Bacillus anthracis str. A0248], gi... gi\|167530841, gi... - gi\|167634040\|ref\|ZP_02392363.1\| spore germination protein GerHC [Bacillus anthracis str. A0442], gi\|... gi\|254687543 - gi\|254687543\|ref\|ZP_05151399.1\| spore germination protein GerHC [Bacillus anthracis str. CNEVA-9066] gi\|165869819, gi... - gi\|165869819\|ref\|ZP_02214477.1\| spore germination protein GerHC [Bacillus anthracis str. A0488], gi\|... gi\|254725108 - gi\|254725108\|ref\|ZP_05186891.1\| spore germination protein GerHC [Bacillus anthracis str. A1055] gi\|49187624, gi\|... - gi\|49187624\|ref\|YP_030877.1\| spore germination protein GerHC [Bacillus anthracis str. Sterne], gi\|49... gi\|170685942, gi... - gi\|170685942\|ref\|ZP_02877165.1\| spore germination protein GerHC [Bacillus anthracis str. A0465], gi\|... gi\|254736846 - gi\|254736846\|ref\|ZP_05194552.1\| spore germination protein GerHC [Bacillus anthracis str. Western Nor... gi\|47530285, gi\|... - gi\|47530285\|ref\|YP_021634.1\| spore germination protein GerHC [Bacillus anthracis str. 'Ames Ancestor... gi\|167638224, gi... - gi\|167638224\|ref\|ZP_02396502.1\| spore germination protein GerHC [Bacillus anthracis str. A0193], gi\|... gi\|254741881 - gi\|254741881\|ref\|ZP_05199568.1\| spore germination protein GerHC [Bacillus anthracis str. Kruger B] gi\|30264803, gi\|... - gi\|30264803\|ref\|NP_847180.1\| spore germination protein GerHC [Bacillus anthracis str. Ames], gi\|3025... gi\|172082908, gi... - gi\|177651082\|ref\|ZP_02933913.1\| spore germination protein GerHC [Bacillus anthracis str. A0174], gi\|... gi\|254754521 - gi\|254754521\|ref\|ZP_05206556.1\| spore germination protein GerHC [Bacillus anthracis str. Vollum] gi\|65322104, gi\|... - gi\|65322104\|ref\|ZP_00395063.1\| hypothetical protein Bant_01005632 [Bacillus anthracis str. A2012], r... gi\|170705449, gi... - gi\|170705449\|ref\|ZP_02895913.1\| spore germination protein GerHC [Bacillus anthracis str. A0389], gi\|... gi\|254757353 - gi\|254757353\|ref\|ZP_05209380.1\| spore germination protein GerHC [Bacillus anthracis str. Australia 9...	282.0	[0..1]	[331..33]
gi\|89207074, gi\|... - gi\|89207074\|ref\|ZP_01185622.1\| Spore germination B3 GerAC like, C-terminal [Bacillus weihenstephanen...	281.0	[0..1]	[331..30]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIHVGGFDIT KNKKFRGTIL YPDYTKGVQS KPETQSTHAG TIETISSLLN AKSPHTIAVG  60
   61 QMRVVLFGKA FGEHGLGDVI NNLQRDPNIG RDVQLALVDG SSEELLKHVR TNGSLYLSEL 120
  121 LEQNIKT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [128-331]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETIPRTALNI FLYNFYSSGC DPFLPYIQVS EDKSASIKGL AFLKKDKVAM YTDRKRSFLF  60
   61 KLLINPTKNG RYEVPIRQGK HKGVIATQNL SGNSVCSLSS NGDIPKVNIH LKLNGLVKNA 120
  121 PSWLDLSKGK NVTYVKRHIE KMLEKDLNEL IKQFQENKID PIGIREEIRS HSRKWSMKQI 180
  181 QDMYPNVDIA VNVKINVVQS GIGE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	21.09691
Match:	PF05504.2
Description:	No description for PF05504.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits