YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49184583, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	437 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49184583, gi|....

Description	E-value	Query Range	Subject Range
gi\|30019797, gi\|... - gi\|30019797\|ref\|NP_831428.1\| flagellar hook protein FlgE [Bacillus cereus ATCC 14579], gi\|29895342\|g... gi\|229149956, gi... - gi\|229149956\|ref\|ZP_04278184.1\| Flagellar hook protein FlgE [Bacillus cereus m1550], gi\|228633637\|gb... gi\|228656432, gi... - gi\|229127079\|ref\|ZP_04256078.1\| Flagellar hook protein FlgE [Bacillus cereus BDRD-Cer4], gi\|22865643... gi\|228725886, gi... - gi\|229043508\|ref\|ZP_04191218.1\| Flagellar hook protein FlgE [Bacillus cereus AH676], gi\|228725886\|gb...	2.0E-77	[1..437]	[1..437]
gi\|49331893, gi\|... - gi\|49480337\|ref\|YP_035873.1\| flagellar hook protein FlgE [Bacillus thuringiensis serovar konkukian s...	2.0E-76	[1..437]	[1..437]
gi\|52143704, gi\|... - gi\|52143704\|ref\|YP_083124.1\| flagellar hook protein FlgE [Bacillus cereus E33L], gi\|51977173\|gb\|AAU1... gi\|229121305, gi... - gi\|229121305\|ref\|ZP_04250536.1\| Flagellar hook protein FlgE [Bacillus cereus 95/8201], gi\|228662150\|... gi\|228926789, gi... - gi\|228926789\|ref\|ZP_04089857.1\| Flagellar hook protein FlgE [Bacillus thuringiensis serovar pondiche...	5.0E-75	[1..437]	[1..437]
gi\|110890382, gi... - gi\|111115108\|ref\|YP_709726.1\| flagellar hook protein FlgE [Borrelia afzelii PKo], gi\|110890382\|gb\|AB... gi\|216263795, gi... - gi\|216263795\|ref\|ZP_03435789.1\| flagellar hook protein FlgE [Borrelia afzelii ACA-1], gi\|215979839\|g...	1.0E-72	[1..436]	[1..441]
gi\|4426943 - gi\|4426943\|gb\|AAD20617.1\| flagellar hook protein FlgE [Treponema denticola] gi\|41819538, gi\|... - gi\|42528268\|ref\|NP_973366.1\| flagellar hook protein FlgE [Treponema denticola ATCC 35405], gi\|418195...	2.0E-72	[1..437]	[1..463]
gi\|223885825, gi... - gi\|223889009\|ref\|ZP_03623600.1\| flagellar hook protein FlgE [Borrelia burgdorferi 64b], gi\|223885825... gi\|226321601, gi... - gi\|226321601\|ref\|ZP_03797127.1\| flagellar hook protein FlgE [Borrelia burgdorferi Bol26], gi\|2262327... FLGE_BORBU - Flagellar hook protein FlgE OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680... FLGE_BORBU - Flagellar hook protein flgE OS=Borrelia burgdorferi GN=flgE PE=3 SV=1	2.0E-72	[1..436]	[1..441]
gi\|166854561, gi... - gi\|167040321\|ref\|YP_001663306.1\| hypothetical protein Teth514_1684 [Thermoanaerobacter sp. X514], gi... gi\|242231919, gi... - gi\|242256546\|ref\|ZP_04801435.1\| protein of unknown function DUF1078 domain protein [Thermoanaerobact...	2.0E-72	[1..437]	[1..417]
gi\|166856494, gi... - gi\|76796425\|ref\|ZP_00778787.1\| Flagellar basal body rod protein:Protein of unknown function DUF1078:... gi\|241903061, gi... - gi\|241903061\|ref\|ZP_04787790.1\| protein of unknown function DUF1078 domain protein [Thermoanaerobact...	2.0E-72	[1..437]	[1..417]
gi\|1184296 - gi\|1184296\|gb\|AAA87351.1\| flagellar hook protein	6.0E-72	[1..436]	[1..441]
FLGE_TREPH - Flagellar hook protein FlgE OS=Treponema phagedenis GN=flgE PE=3 SV=1	2.0E-71	[1..437]	[1..463]

Back

Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKALYTSIT GMNAAQNALS VTSNNIANAQ TVGYKKQKAI FDDLLYNNTV GSRGDGAYAG  60
   61 TNPKSIGNGV KFSGTSTDFS DGSITLT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [88-437]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDKMETAIEG NGLFLVGDRN AGNVEYTRKG SFGVSKDNYV TTTGGQYVLG YGVKTGTQEI  60
   61 DFSSRPSPIH IPMGSAVGGI QTDKATIGGN LPRNQNALSH EFTVFDAEGN SLTLRVNIKQ 120
  121 KTTKETVDGK EVEKPVPGEY TYTVSVRNDS KNEKEFKPVE GMTGEKNLKF DTLGNLKETD 180
  181 EAVQKDPVTG EIIKGGSVQI PFGSGLTLDL SGLTNYPTGK TLSTTEVTGR PAAIANDYSI 240
  241 SDGGFVMMKY SDGSMKVVGQ LAVATFPNSG GLMKTGNGNY VATPSAGIPG IGVAGENGAG 300
  301 NVRGSAKESS NVDLSVEFVD LMLYQRGFQG NAKVIKVSDE VLNEVVNLIR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	1wlgA
Description:	Crystal structure of FlgE31, a major fragment of the hook protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits