YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261770, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	252 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261770, gi|....

Description	E-value	Query Range	Subject Range
gi\|68529001, gi\|... - gi\|94314220\|ref\|YP_587429.1\| flagellar biosynthesis protein FliP [Ralstonia metallidurans CH34], gi\|...	1.0E-75	[5..251]	[14..262]
gi\|134137327, gi... - gi\|67546873\|ref\|ZP_00424782.1\| Flagellar transport protein FliP [Burkholderia vietnamiensis G4], gi\|...	1.0E-74	[3..251]	[1..252]
FLIP_BUCAI - Flagellar biosynthetic protein fliP OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=fliP PE=3 S... FLIP_BUCAI - Flagellar biosynthetic protein FliP OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) G... gi\|25403546 - gi\|25403546\|pir\|\|B84939 flagellar biosynthetic protein fliP [imported] - Buchnera sp. (strain APS)	2.0E-74	[15..251]	[140..377]
gi\|73539701, gi\|... - gi\|73539701\|ref\|YP_300068.1\| flagellar biosynthesis protein FliP [Ralstonia eutropha JMP134], gi\|721...	3.0E-74	[2..251]	[10..263]
gi\|110829741, gi... - gi\|111612881\|ref\|ZP_01399965.1\| Flagellar biosynthesis pathway component FliP-like [Verminephrobacte...	3.0E-74	[30..251]	[137..358]
gi\|124871414, gi... - gi\|84356431\|ref\|ZP_00981278.1\| COG1338: Flagellar biosynthesis pathway, component FliP [Burkholderia... gi\|105891784, gi... - gi\|67657422\|ref\|ZP_00454800.1\| Flagellar transport protein FliP [Burkholderia cenocepacia AU 1054], ... gi\|170731411, gi... - gi\|170731411\|ref\|YP_001763358.1\| flagellar biosynthesis protein FliP [Burkholderia cenocepacia MC0-3... gi\|67667198, gi\|... - gi\|67667198\|ref\|ZP_00464428.1\| Flagellar transport protein FliP [Burkholderia cenocepacia HI2424], g...	5.0E-74	[3..252]	[1..253]
gi\|91776320, gi\|... - gi\|91776320\|ref\|YP_546076.1\| flagellar biosynthesis protein FliP [Methylobacillus flagellatus KT], g...	8.0E-74	[41..251]	[39..249]
gi\|149366232, gi... - gi\|149366232\|ref\|ZP_01888267.1\| flagellar biosynthetic protein FliP [Yersinia pestis CA88-4125], gi\|... gi\|145598592, gi... - gi\|145598592\|ref\|YP_001162668.1\| flagellar biosynthesis protein FliP [Yersinia pestis Pestoides F], ... gi\|165925983, gi... - gi\|165925983\|ref\|ZP_02221815.1\| flagellar biosynthetic protein FliP [Yersinia pestis biovar Oriental... Q3V7P1\|Q3V7P1_YERPS - Flagellar biosynthetic protein FliP precursor - Yersinia pseudotuberculosis gi\|45441390, gi\|... - gi\|45441390\|ref\|NP_992929.1\| flagellar biosynthesis protein [Yersinia pestis biovar Microtus str. 91... gi\|21959354, gi\|... - gi\|22126369\|ref\|NP_669792.1\| flagellar biosynthesis protein [Yersinia pestis KIM], gi\|21959354\|gb\|AA... gi\|108779105, gi... - gi\|108807192\|ref\|YP_651108.1\| flagellar biosynthetic protein FliP [Yersinia pestis Antiqua], gi\|1087... gi\|153950312, gi... - gi\|153950312\|ref\|YP_001401271.1\| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis IP... gi\|229680287, gi... - gi\|229902840\|ref\|ZP_04517957.1\| flagellar biosynthetic protein FliP [Yersinia pestis Nepal516], gi\|2... gi\|51589311, gi\|... - gi\|51596029\|ref\|YP_070220.1\| flagellar biosynthesis protein [Yersinia pseudotuberculosis IP 32953], ... gi\|167425832, gi... - gi\|167425832\|ref\|ZP_02317585.1\| flagellar biosynthetic protein FliP [Yersinia pestis biovar Mediaeva... gi\|169751161, gi... - gi\|170024627\|ref\|YP_001721132.1\| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis YP... gi\|186895134, gi... - gi\|186895134\|ref\|YP_001872246.1\| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis PB... gi\|218928941 - gi\|218928941\|ref\|YP_002346816.1\| flagellar biosynthesis protein FliP [Yersinia pestis CO92] gi\|165938702, gi... - gi\|165938702\|ref\|ZP_02227257.1\| flagellar biosynthetic protein FliP [Yersinia pestis biovar Oriental... gi\|229688970, gi... - gi\|229897929\|ref\|ZP_04513080.1\| flagellar biosynthetic protein FliP [Yersinia pestis biovar Oriental... gi\|166010952, gi... - gi\|166010952\|ref\|ZP_02231850.1\| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua ... gi\|166210900, gi... - gi\|166210900\|ref\|ZP_02236935.1\| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua ... gi\|229701188, gi... - gi\|229896265\|ref\|ZP_04511435.1\| flagellar biosynthetic protein FliP [Yersinia pestis Pestoides A], g... gi\|167420038, gi... - gi\|167420038\|ref\|ZP_02311791.1\| flagellar biosynthetic protein FliP [Yersinia pestis biovar Oriental... gi\|229897202, gi... - gi\|229897202\|ref\|ZP_04512358.1\| flagellar biosynthetic protein FliP [Yersinia pestis biovar Oriental...	1.0E-73	[7..251]	[26..272]
gi\|194713184, gi... - gi\|194737682\|ref\|YP_002115013.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. ent... gi\|197247593, gi... - gi\|197247593\|ref\|YP_002146044.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. ent... gi\|197264056, gi... - gi\|197264056\|ref\|ZP_03164130.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. ente... gi\|197939225, gi... - gi\|198244709\|ref\|YP_002215107.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. ent... gi\|195634044, gi... - gi\|195634044\|gb\|EDX52396.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica... gi\|205340666, gi... - gi\|205340666\|gb\|EDZ27430.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica... gi\|194444637, gi... - gi\|194444637\|ref\|YP_002041244.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. ent... gi\|194455181, gi... - gi\|194468817\|ref\|ZP_03074801.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. ente... gi\|160864246, gi... - gi\|161502899\|ref\|YP_001570011.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. ari... gi\|167552788, gi... - gi\|205322623\|gb\|EDZ10462.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica... gi\|205331887, gi... - gi\|205331887\|gb\|EDZ18651.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica... gi\|197288073, gi... - gi\|197288073\|gb\|EDY27460.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica... gi\|16503220, gi\|... - gi\|25316655\|pir\|\|AD0753 flagellar biosynthetic protein FliP [imported] - Salmonella enterica subsp. ... gi\|213650743 - gi\|213650743\|ref\|ZP_03380796.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. ente... gi\|29137012, gi\|... - gi\|29141385\|ref\|NP_804727.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enteric... gi\|213855268 - gi\|213855268\|ref\|ZP_03383508.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. ente... gi\|224583522, gi... - gi\|224583522\|ref\|YP_002637320.1\| flagellar biosynthesis protein [Salmonella enterica subsp. enterica... gi\|213163376 - gi\|213163376\|ref\|ZP_03349086.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. ente... gi\|213417182 - gi\|213417182\|ref\|ZP_03350326.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. ente... gi\|16760923 - gi\|16760923\|ref\|NP_456540.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enteric... gi\|213424995 - gi\|213424995\|ref\|ZP_03357745.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. ente... gi\|213584779 - gi\|213584779\|ref\|ZP_03366605.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. ente... gi\|199603508, gi... - gi\|200391063\|ref\|ZP_03217674.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. ente... gi\|204931035, gi... - gi\|204931035\|ref\|ZP_03221861.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. ente... gi\|62128187, gi\|... - gi\|62180554\|ref\|YP_216971.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enteric... gi\|207856508, gi... - gi\|207856508\|ref\|YP_002243159.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. ent... gi\|213023112 - gi\|213023112\|ref\|ZP_03337559.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. ente...	1.0E-73	[13..251]	[4..243]
gi\|77962314 - gi\|77962314\|ref\|ZP_00826136.1\| COG1338: Flagellar biosynthesis pathway, component FliP [Yersinia mol...	2.0E-73	[13..251]	[17..255]

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Predicted Domain #1

Region A:
Residues: [1-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIKKQLSLL AVIFVFSIVF SIIFVNPAYA AQNGFINFEN GKEFTSNSSV QLFALVTLLS  60
   61 LSSSIVLLFT HFTYFMIVLG ITRQGLGVMN LPPNQVLVGL ALFLSLFTMQ PVLGQLKSDV 120
  121 WDPMTKEKIT VSQAAETTAP IMKEYMSKHT YKHDLKMMLK VRGEELPKDL KDLSLFTLVP 180
  181 SFTLTQIQKG LLTGMFIYLA FVFIDLIIST LLMYLGMMMV PPMILSLPFK ILIFVYLGGY 240
  241 TKIVDIMFKT VA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	49.30103
Match:	PF00813.11
Description:	No description for PF00813.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits