YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49184786, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	544 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49184786, gi|....

Description	E-value	Query Range	Subject Range
gi\|42736987, gi\|... - gi\|42781066\|ref\|NP_978313.1\| hypothetical protein BCE_1997 [Bacillus cereus ATCC 10987], gi\|42736987...	0.0	[1..544]	[1..544]
gi\|47568311, gi\|... - gi\|47568311\|ref\|ZP_00239013.1\| copper resistance protein [Bacillus cereus G9241], gi\|47555004\|gb\|EAL...	0.0	[1..544]	[1..544]
gi\|49481166, gi\|... - gi\|49481166\|ref\|YP_036085.1\| copper resistance protein [Bacillus thuringiensis serovar konkukian str...	0.0	[1..544]	[1..544]
gi\|52143504, gi\|... - gi\|52143504\|ref\|YP_083326.1\| copper resistance protein [Bacillus cereus E33L], gi\|51976973\|gb\|AAU185...	0.0	[1..544]	[4..547]
gi\|228656100, gi... - gi\|229127267\|ref\|ZP_04256263.1\| Copper resistance protein [Bacillus cereus BDRD-Cer4], gi\|228656100\|... gi\|30019980, gi\|... - gi\|30019980\|ref\|NP_831611.1\| copper resistance protein [Bacillus cereus ATCC 14579], gi\|29895525\|gb\|...	0.0	[1..544]	[6..549]
gi\|89154354, gi\|... - gi\|89207723\|ref\|ZP_01186257.1\| Copper resistance protein CopC:Copper resistance D [Bacillus weihenst...	0.0	[2..544]	[5..547]
gi\|75763508, gi\|... - gi\|75763508\|ref\|ZP_00743222.1\| Copper resistance protein [Bacillus thuringiensis serovar israelensis...	0.0	[1..544]	[6..549]
gi\|153191584, gi... - gi\|254912619\|ref\|ZP_05262631.1\| hypothetical protein LmonJ2_07481 [Listeria monocytogenes J2818], gi... gi\|153183543, gi... - gi\|254899240\|ref\|ZP_05259164.1\| hypothetical protein LmonJ_05489 [Listeria monocytogenes J0161], gi\|... gi\|47097476, gi\|... - gi\|47097476\|ref\|ZP_00235019.1\| copper resistance domain protein [Listeria monocytogenes str. 1/2a F6... gi\|254936946 - gi\|254936946\|ref\|ZP_05268643.1\| hypothetical protein LmonF6_07461 [Listeria monocytogenes F6900]	0.0	[1..541]	[4..539]
gi\|224501139 - gi\|224501139\|ref\|ZP_03669446.1\| hypothetical protein LmonFR_01230 [Listeria monocytogenes FSL R2-561... gi\|16804101 - gi\|16804101\|ref\|NP_465586.1\| hypothetical protein lmo2062 [Listeria monocytogenes EGD-e] gi\|16411532, gi\|... - pir\|\|AF1332 copper export proteins homolog lmo2062 [imported] - Listeria monocytogenes (strain EGD-e...	0.0	[1..541]	[4..539]
gi\|16801234 - gi\|16801234\|ref\|NP_471502.1\| hypothetical protein lin2168 [Listeria innocua Clip11262] gi\|16414682, gi\|... - pir\|\|AF1703 copper export protein homolog lin2168 [imported] - Listeria innocua (strain Clip11262), ...	0.0	[2..541]	[5..539]

Back

Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRIGILLFI ACMLIILIPK SASAHAYVVK SNPAENETLK KAPSVVKIEF DEDIQVSSFN  60
   61 TLYVRDTSGK RVDLKDAHID KKNKKLLEAG LKENLKNGLY SIQWKVISAD GHPIQGVIPF 120
  121 RIGLAEAEAD DIQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.39794
Match:	1m42A
Description:	Copper resistance protein C (CopC, PcoC)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [134-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEEMGYVPQI DMIMERGILY TSFSLFIGVL FFNLIMYKGN VIEVQLRSKK IIWISLFGIL  60
   61 ISLLFNLPLQ AKINADVSWL EAFNPLLLKE TLQLSVFGYV WITQMTLISS LIIVTYFAMK 120
  121 RGKLSSFKVW SIPIVLFIGI LVMKACNSH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [283-428]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AYGLKFKDIA VVMDFLHLFA ASLWIGGLSS IILLLRNEDN KWSMYWDMIK RFSPWATCAV  60
   61 IVIFITGLFN STFFIPTIHS LFDTKYGLAL LAKILLFIFM GILGIIHYVK GKMRAEQGLG 120
  121 ATVKVEFIIG IIIFVIVAFM TNVQTP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [429-544]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PMPPIGPFTE SKQLDNGYEM TLNVSPNKVG QNIFHITLKD ENGQPVTDME QIILTTQSLD  60
   61 MNMGKGSFKV SAVSPGEYEA EGMYINMTGN WNIQVHGLTK SLDSFDTDYK FIVGGR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits