YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256607, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	333 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256607, gi|....

Description	E-value	Query Range	Subject Range
gi\|51976939, gi\|... - gi\|52143470\|ref\|YP_083361.1\| microcin immunity protein [Bacillus cereus E33L], gi\|51976939\|gb\|AAU184...	0.0	[1..333]	[1..333]
gi\|47568351, gi\|... - gi\|47568351\|ref\|ZP_00239053.1\| microcin immunity protein MccF VCA0439 [Bacillus cereus G9241], gi\|47...	0.0	[1..333]	[1..333]
gi\|229127384, gi... - gi\|229127384\|ref\|ZP_04256379.1\| Microcin immunity protein [Bacillus cereus BDRD-Cer4], gi\|228656066\|... gi\|229109441, gi... - gi\|229109441\|ref\|ZP_04239035.1\| Microcin immunity protein [Bacillus cereus Rock1-15], gi\|228674008\|g... gi\|30020089, gi\|... - gi\|30020089\|ref\|NP_831720.1\| microcin C7 self-immunity protein mccF [Bacillus cereus ATCC 14579], gi...	0.0	[1..332]	[1..332]
gi\|42737023, gi\|... - gi\|42781102\|ref\|NP_978349.1\| microcin immunity protein MccF [Bacillus cereus ATCC 10987], gi\|4273702...	0.0	[1..332]	[1..332]
gi\|49481175, gi\|... - gi\|49481175\|ref\|YP_036115.1\| microcin immunity protein [Bacillus thuringiensis serovar konkukian str...	0.0	[1..333]	[1..333]
YV37_VIBCH, Y313... - (O31020) Hypothetical protein VCA0337, Putative carboxypeptidase VC_A0337 OS=Vibrio cholerae GN=VC_A... Y3137_VIBCH - Putative carboxypeptidase VC_A0337 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba ... gi\|121728691, gi... - gi\|121730125\|ref\|ZP_01682524.1\| argininosuccinate lyase [Vibrio cholerae V52], gi\|121728691\|ref\|ZP_0... gi\|121586073, gi... - gi\|121586122\|ref\|ZP_01675914.1\| microcin immunity protein MccF [Vibrio cholerae 2740-80], gi\|1215860... gi\|147672303, gi... - gi\|227119562\|ref\|YP_002821457.1\| microcin immunity protein MccF [Vibrio cholerae O395], gi\|227015012...	0.0	[1..331]	[1..330]
gi\|27366478, gi\|... - gi\|27366478\|ref\|NP_762005.1\| hypothetical protein VV2_0015 [Vibrio vulnificus CMCP6], gi\|27358044\|gb...	0.0	[1..327]	[22..348]
gi\|37676184, gi\|... - gi\|37676184\|ref\|NP_936580.1\| hypothetical protein VVA0524 [Vibrio vulnificus YJ016], gi\|37200725\|dbj...	0.0	[1..327]	[1..327]
gi\|84385592, gi\|... - gi\|84385592\|ref\|ZP_00988623.1\| microcin immunity protein MccF [Vibrio splendidus 12B01], gi\|84379572...	0.0	[2..331]	[7..335]

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Predicted Domain #1

Region A:
Residues: [1-333]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLPKSLKYG DTIGIYSPSS PVTYTSPKRF ERAKSYLLQK GFHILEGSLT GRYDYYRSGS  60
   61 IQERAKELNA LIRNPNVSCI MSTIGGMNSN SLLPYIDYDA FQNNPKIMIG YSDATALLLG 120
  121 IYAKTGIPTF YGPALVPSFG EFEPFVDDTY KYFLETLLHD QALPYNIKQP LFWSDEFINW 180
  181 EEKTKEKELR PNNWISVTNG QATGRVIGGN LNTIQGIWGS PYMPCIQEGD ILFIEDSSKD 240
  241 AATIERSFSF LKINGVFDKV SGIILGKHEQ FDDCGTNRKP YEILLEVLQN QRIPLLADFD 300
  301 CCHTHPMITM PIGVQVKMDA TNKTIHILEK WKI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.0
Match:	1zl0A
Description:	hypothetical protein PA5198 from Pseudomonas aeruginosa.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.30391542469987	bayes_pls_golite062009
ligase activity	0.0143816267345168	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: