YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49184927, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	448 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49184927, gi|....

Description	E-value	Query Range	Subject Range
gi\|75762736, gi\|... - gi\|75762736\|ref\|ZP_00742568.1\| Branched chain amino acid transport system II carrier protein [Bacill...	0.0	[1..448]	[3..450]
gi\|152975342, gi... - gi\|89202735\|ref\|ZP_01181447.1\| Branched-chain amino acid transport system II carrier protein [Bacill...	0.0	[1..448]	[18..465]
gi\|89153322, gi\|... - gi\|89208760\|ref\|ZP_01187249.1\| Branched-chain amino acid transport system II carrier protein [Bacill...	0.0	[1..448]	[3..450]
gi\|51976836, gi\|... - gi\|52143367\|ref\|YP_083462.1\| branched-chain amino acid transport system carrier protein [Bacillus ce...	0.0	[1..448]	[1..448]
gi\|29895734, gi\|... - gi\|30020184\|ref\|NP_831815.1\| branched chain amino acid ABC transporter carrier protein [Bacillus cer...	0.0	[4..448]	[1..445]
gi\|49481264, gi\|... - gi\|49481264\|ref\|YP_036209.1\| branched-chain amino acid transport system carrier protein [Bacillus th...	0.0	[1..448]	[1..448]
gi\|47777997, gi\|... - gi\|47777997\|ref\|YP_018704.2\| branched chain amino acid ABC transporter carrier protein [Bacillus ant... gi\|30262086, gi\|... - gi\|30262086\|ref\|NP_844463.1\| branched-chain amino acid transport system II carrier protein [Bacillus...	0.0	[4..448]	[1..445]
gi\|47556460, gi\|... - gi\|47566831\|ref\|ZP_00237549.1\| branched-chain amino acid transport system II carrier protein [Bacill...	0.0	[19..448]	[1..430]

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Predicted Domain #1

Region A:
Residues: [1-448]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSMKGRLRP GDTVAIGLML FALFLGAGNL IFPPVLGQQA GENVWVATIG FLVTGVGLPL  60
   61 LAVTAVAFVE GDLKALSSRV HPIFAFVFPL ISYLAIGPFF AIPRTGAVSF EMGMKPFLSE 120
  121 ALVSEWYMLF LFTIIFFGIT WYLSLNPSKL VDWFGKFLTP VLVLIVAVIV GKAIIDPIGE 180
  181 PAAPLAAYKE NAFFGGFIQG YLTMDAISAL VFGIVVVQVI RSKGIKESNQ IAKITVVSGI 240
  241 IAVLGLTLIY LSLAYLGSTS TSLGISENGG LILTNVVNEL YGTGGKILLG LVIILACLTT 300
  301 SVGLTSACAG FFTNLFPKLS HKTIVTMVCV FSLIVSNLGL TQLIAVTLPV LMIIYPVAIV 360
  361 LIVLSYFHKW IGKRNTIYIG AILGALLISF FNGLESAKIK IDAISNVLQI LPLYNEGIGW 420
  421 LIPSCIGGIL GFFFYKSNES SELQKKGA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.17
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits