YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30257003, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	400 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30257003, gi|....

Description	E-value	Query Range	Subject Range
gi\|110827356, gi... - gi\|111615223\|ref\|ZP_01402289.1\| Sugar phosphate permease-like [Verminephrobacter eiseniae EF01-2], g...	1.0E-43	[8..390]	[301..692]
gi\|78495751, gi\|... - gi\|78495751\|ref\|ZP_00847969.1\| Major facilitator superfamily MFS_1 [Rhodopseudomonas palustris BisB1...	3.0E-41	[4..395]	[446..864]
SNF3 - Plasma membrane low glucose sensor that regulates glucose transport; contains 12 predicted transmemb... SNF3_YEAST - High-affinity glucose transporter SNF3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=S...	1.0E-39	[12..397]	[102..554]
gi\|67536615, gi\|... - gi\|67542336\|ref\|ZP_00420273.1\| General substrate transporter:Major facilitator superfamily [Burkhold...	8.0E-38	[8..400]	[277..704]
gi\|60467752, gi\|... - gi\|60467752\|gb\|EAL65769.1\| hypothetical protein DDB0191430 [Dictyostelium discoideum], gi\|29500764\|g... gi\|60467752, gi\|... - gi\|66810832\|ref\|XP_639123.1\| major facilitator superfamily transporter [Dictyostelium discoideum AX4...	4.0E-37	[10..361]	[603..1015]
gi\|85110133 - gi\|85110133\|ref\|XP_963279.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28924953, gi\|... - gi\|32417950\|ref\|XP_329453.1\| hypothetical protein [Neurospora crassa], gi\|28924953\|gb\|EAA34043.1\| hy...	1.0E-36	[5..397]	[379..799]
gi\|218202668 - gi\|218202668\|gb\|EEC85095.1\| hypothetical protein OsI_32467 [Oryza sativa Indica Group] PHT44_ORYSJ - Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1	1.0E-36	[5..383]	[179..580]
gi\|68389434 - gi\|68389434\|ref\|XP_691920.1\| PREDICTED: similar to solute carrier family 17 (sodium-dependent inorga...	6.0E-36	[5..398]	[141..582]
gi\|16080636, gi\|... - gi\|2636109\|emb\|CAB15600.1\| ywtG [Bacillus subtilis subsp. subtilis str. 168], gi\|16080636\|ref\|NP_391... gi\|7446721, gi\|1... - pir\|\|E70070 metabolite transport protein homolog ywtG - Bacillus subtilis, gi\|1894771\|emb\|CAB07473.1...	8.0E-36	[3..398]	[2..438]
gi\|52005333, gi\|... - gi\|52787512\|ref\|YP_093341.1\| YwtG [Bacillus licheniformis ATCC 14580], gi\|52350014\|gb\|AAU42648.1\| Yw...	1.0E-35	[1..385]	[1..423]

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Predicted Domain #1

Region A:
Residues: [1-400]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKSAVNPWL VVLGTVIVQM GLGTIYTWSL FNQPLVSKYG WSLNAVAITF SITSLSLAFS  60
   61 TLFASKLQEK WGLRKLIMIA GLALGLGLIL SSQASSLILL YVLAGVVVGY ADGTAYITSL 120
  121 SNLIKWFPER KGLIAGISVS AYGSGSLIFK YVNAQLIESV GVSQAFIYWG LIVTAMIVLG 180
  181 ACLIHQAADQ SAVQETKTHE YTTKEMLGTK QVYLLFIMLF TSCMSGLYLI GMVKDIGVEL 240
  241 VGLSAATAAN AVAMVAIFNT LGRIILGPLS DKIGRLKIVT GTFVVMASSV LVLSFVDLNY 300
  301 GIYFVCVASV AFCFGGNITI FPAIVGDFFG MKNHSKNYGI VYQGFGFGAL AGSFIGALLG 360
  361 GFKPTFMVIG LLCVVSFIIA MLIQAPNQKK EQEEEYRSVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	1pw4A
Description:	Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transporter activity	2.54286095434601	bayes_pls_golite062009
transmembrane transporter activity	2.01247278444729	bayes_pls_golite062009
substrate-specific transporter activity	1.77039368764865	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.66673693200184	bayes_pls_golite062009
organic acid transmembrane transporter activity	1.27747734153012	bayes_pls_golite062009
active transmembrane transporter activity	0.33203350453105	bayes_pls_golite062009
polyol transmembrane transporter activity	0.24475883286552	bayes_pls_golite062009
alcohol transmembrane transporter activity	0.24475883286552	bayes_pls_golite062009
glycerol transmembrane transporter activity	0.2309068592963	bayes_pls_golite062009
ion transmembrane transporter activity	0.18188709249385	bayes_pls_golite062009
binding	0.105551689569449	bayes_pls_golite062009
glycerol-3-phosphate transmembrane transporter activity	1.26964387230144E-4	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: