YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30257026, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30257026, gi|....

Description	E-value	Query Range	Subject Range
gi\|32397573, gi\|... - gi\|32472201\|ref\|NP_865195.1\| gufA protein [Rhodopirellula baltica SH 1], gi\|32397573\|emb\|CAD72879.1\|...	1.0E-44	[3..243]	[99..359]
gi\|251810150, gi... - gi\|251810150\|ref\|ZP_04824623.1\| ZIP family zinc (Zn2+)-iron (Fe2+) permease [Staphylococcus epidermi... gi\|27314960, gi\|... - gi\|27467417\|ref\|NP_764054.1\| hypothetical protein SE0499 [Staphylococcus epidermidis ATCC 12228], gi... gi\|242234452, gi... - gi\|242242087\|ref\|ZP_04796532.1\| ZIP family zinc (Zn2+)-iron (Fe2+) permease [Staphylococcus epidermi... gi\|57636968, gi\|... - gi\|57866310\|ref\|YP_187976.1\| gufA protein, putative [Staphylococcus epidermidis RP62A], gi\|57636968\|...	7.0E-37	[3..243]	[10..271]
gi\|83814204, gi\|... - gi\|83814204\|ref\|YP_445560.1\| gufA protein [Salinibacter ruber DSM 13855], gi\|83755598\|gb\|ABC43711.1\|...	1.0E-36	[1..243]	[11..276]
gi\|106893403, gi... - gi\|158320117\|ref\|YP_001512624.1\| zinc/iron permease [Alkaliphilus oremlandii OhILAs], gi\|158140316\|g...	2.0E-36	[4..243]	[11..260]
gi\|95930383, gi\|... - gi\|95930383\|ref\|ZP_01313120.1\| zinc/iron permease [Desulfuromonas acetoxidans DSM 684], gi\|95133635\|...	2.0E-36	[1..243]	[8..270]
gi\|73663309, gi\|... - gi\|73663309\|ref\|YP_302090.1\| putative divalent heavy-metal cations transporter [Staphylococcus sapro...	3.0E-36	[1..243]	[8..272]
gi\|48837813, gi\|... - gi\|73670385\|ref\|YP_306400.1\| GufA protein [Methanosarcina barkeri str. Fusaro], gi\|72397547\|gb\|AAZ71...	3.0E-36	[1..243]	[12..273]
gi\|75430317, gi\|... - gi\|75430317\|ref\|ZP_00732714.1\| conserved membrane protein [Actinobacillus succinogenes 130Z], gi\|742...	6.0E-36	[1..243]	[8..276]
gi\|189499484, gi... - gi\|67938052\|ref\|ZP_00530582.1\| Zinc transporter ZIP [Chlorobium phaeobacteroides BS1], gi\|67915913\|g...	8.0E-36	[2..243]	[9..271]
gi\|50750222 - gi\|50750222\|ref\|XP_426562.1\| PREDICTED: similar to Solute carrier family 39 (zinc transporter), memb...	1.0E-35	[94..242]	[794..954]

Back

Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERLWIPMIV TFFSFGGLLL GGAVSIATRQ LIEEKMHRLY ALCGGVLLGL LSLEIIPETF  60
   61 SSYEIIGPIL GIAIGVLVMS LLDNYC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [87-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HHPMIHKKDQ QAWQTFLFLS FAIFIHNLPS GFALGTAFIN HADSAIPFLM AIVIHHIPEG  60
   61 LALIIPFLFT KHKYISFLLT TLLLSLILGT GTVFGILMEG KALHLQGLIM GSAIGSLGYV 120
  121 TIHEMLWKAK KQLSFLTFLM WASSGFFLII VFTLLAGHH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits