YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262813, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	393 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262813, gi|....

Description	E-value	Query Range	Subject Range
gi\|42737855, gi\|... - gi\|42781931\|ref\|NP_979178.1\| dltD protein [Bacillus cereus ATCC 10987], gi\|42737855\|gb\|AAS41786.1\| d...	0.0	[1..393]	[1..393]
gi\|47555639, gi\|... - gi\|47567662\|ref\|ZP_00238372.1\| dltD protein [Bacillus cereus G9241], gi\|47555639\|gb\|EAL13980.1\| dltD...	0.0	[1..393]	[1..393]
gi\|49329434, gi\|... - gi\|49477878\|ref\|YP_036931.1\| DltD protein [Bacillus thuringiensis serovar konkukian str. 97-27], gi\|...	0.0	[1..393]	[1..393]
gi\|21400744, gi\|... - gi\|65320139\|ref\|ZP_00393098.1\| COG3966: Protein involved in D-alanine esterification of lipoteichoic...	0.0	[1..393]	[1..393]
gi\|51976135, gi\|... - gi\|52142666\|ref\|YP_084163.1\| membrane anchor protein associated with esterification of lipoteichoic ...	0.0	[1..393]	[1..393]
gi\|228655045, gi... - gi\|229128186\|ref\|ZP_04257167.1\| hypothetical protein bcere0015_26310 [Bacillus cereus BDRD-Cer4], gi... gi\|30020964, gi\|... - gi\|30020964\|ref\|NP_832595.1\| protein dltD precursor [Bacillus cereus ATCC 14579], gi\|29896517\|gb\|AAP...	0.0	[1..393]	[1..393]
gi\|165870471, gi... - gi\|165870471\|ref\|ZP_02215126.1\| D-alanyl-lipoteichoic acid biosynthesis protein DltD [Bacillus anthr... gi\|254740425 - gi\|254740425\|ref\|ZP_05198116.1\| D-alanyl-lipoteichoic acid biosynthesis protein DltD [Bacillus anthr... gi\|254733885 - gi\|254733885\|ref\|ZP_05191599.1\| D-alanyl-lipoteichoic acid biosynthesis protein DltD [Bacillus anthr... gi\|254682469 - gi\|254682469\|ref\|ZP_05146330.1\| D-alanyl-lipoteichoic acid biosynthesis protein DltD [Bacillus anthr... gi\|229602931, gi... - gi\|229602931\|ref\|YP_002865881.1\| D-alanyl-lipoteichoic acid biosynthesis protein DltD [Bacillus anth... gi\|254758911 - gi\|254758911\|ref\|ZP_05210938.1\| D-alanyl-lipoteichoic acid biosynthesis protein DltD [Bacillus anthr... gi\|254753816 - gi\|254753816\|ref\|ZP_05205851.1\| D-alanyl-lipoteichoic acid biosynthesis protein DltD [Bacillus anthr... gi\|47526659, gi\|... - gi\|47526659\|ref\|YP_018008.1\| dltd protein [Bacillus anthracis str. 'Ames Ancestor'], gi\|47501807\|gb\|... gi\|30255321, gi\|... - gi\|30261467\|ref\|NP_843844.1\| dltD protein [Bacillus anthracis str. Ames], gi\|30255321\|gb\|AAP25330.1\|... gi\|49184301, gi\|... - gi\|49184301\|ref\|YP_027553.1\| dltD protein [Bacillus anthracis str. Sterne], gi\|49178228\|gb\|AAT53604.... gi\|190568098, gi... - gi\|190568098\|ref\|ZP_03021008.1\| D-alanyl-lipoteichoic acid biosynthesis protein DltD [Bacillus anthr... gi\|172082855, gi... - gi\|177651577\|ref\|ZP_02934366.1\| D-alanyl-lipoteichoic acid biosynthesis protein DltD [Bacillus anthr... gi\|170706229, gi... - gi\|170706229\|ref\|ZP_02896690.1\| D-alanyl-lipoteichoic acid biosynthesis protein DltD [Bacillus anthr... gi\|227005214, gi... - gi\|227815784\|ref\|YP_002815793.1\| D-alanyl-lipoteichoic acid biosynthesis protein DltD [Bacillus anth... gi\|170686865, gi... - gi\|170686865\|ref\|ZP_02878085.1\| D-alanyl-lipoteichoic acid biosynthesis protein DltD [Bacillus anthr... gi\|167639260, gi... - gi\|167639260\|ref\|ZP_02397532.1\| D-alanyl-lipoteichoic acid biosynthesis protein DltD [Bacillus anthr... gi\|167634314, gi... - gi\|167634314\|ref\|ZP_02392635.1\| D-alanyl-lipoteichoic acid biosynthesis protein DltD [Bacillus anthr...	0.0	[4..391]	[3..389]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMKHAFGPI ILACVLFFII ILIPSKSLVS LISDKKVEDA ATSLQKEKLQ SVFLQQKMLE  60
   61 NSQYLPMYGS SEFLRMDAYH PSNYFKVNP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	19.769551
Match:	PF04915.3
Description:	No description for PF04915.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [90-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGFTPYLIGI GGTQSLAHIL NMTSTMDELE GKKVVFVLSP QWFTKTGVSQ GDFTNNFSKQ  60
   61 QAYHFIFNDK INVEMKKQIA KRLLDYKVVQ EDDILKNSLE GIVYNDTKHN IKAGLVKPLA 120
  121 YMHRNILDHR DLFNSIFKIE PMKEKTNVGL RSISWVDARK HAEEEGKAES TTN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	40.481486
Match:	PF04918.3
Description:	No description for PF04918.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [263-393]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFGIENPYYY KHNLKKKLKG LKNFRANESY EESPEYDDLQ IVLNIFKEKN VKPLFISVPV  60
   61 NGPWYDYAGF PKERREVYYK KVREQVEKAG YPVVDFSGHE YDKYFLKDTI HLGWKGWIYF 120
  121 DEAVQNFYTE K

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	61.568636
Match:	PF04914.3
Description:	No description for PF04914.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.843	N/A	N/A	c.3.1	FAD/NAD(P)-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits