YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30257970, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	441 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30257970, gi|....

Description	E-value	Query Range	Subject Range
gi\|170731982, gi... - gi\|170731982\|ref\|YP_001763929.1\| gluconate transporter [Burkholderia cenocepacia MC0-3], gi\|16981522... gi\|116646774, gi... - gi\|67666947\|ref\|ZP_00464183.1\| Gluconate transporter [Burkholderia cenocepacia HI2424], gi\|67099473\|... gi\|67092001, gi\|... - gi\|67660372\|ref\|ZP_00457720.1\| Gluconate transporter [Burkholderia cenocepacia AU 1054], gi\|67092001...	4.0E-78	[4..441]	[8..453]
gi\|48785121, gi\|... - gi\|91785188\|ref\|YP_560394.1\| Na+/gluconate symporter, GntP [Burkholderia xenovorans LB400], gi\|91689...	4.0E-78	[4..441]	[8..465]
gi\|78065224, gi\|... - gi\|78065224\|ref\|YP_367993.1\| gluconate transporter [Burkholderia sp. 383], gi\|77965969\|gb\|ABB07349.1...	2.0E-77	[4..441]	[8..453]
gi\|124871105, gi... - gi\|84356706\|ref\|ZP_00981542.1\| COG2610: H+/gluconate symporter and related permeases [Burkholderia c...	4.0E-77	[4..441]	[8..453]
gi\|72121188, gi\|... - gi\|73537851\|ref\|YP_298218.1\| gluconate transporter [Ralstonia eutropha JMP134], gi\|72121188\|gb\|AAZ63...	5.0E-77	[3..427]	[7..439]
gi\|115280599, gi... - gi\|74019709\|ref\|ZP_00690322.1\| Gluconate transporter [Burkholderia ambifaria AMMD], gi\|72607521\|gb\|E... gi\|118641437, gi... - gi\|172059644\|ref\|YP_001807296.1\| gluconate transporter [Burkholderia ambifaria MC40-6], gi\|171992161...	1.0E-76	[4..441]	[8..453]
gi\|83653210, gi\|... - gi\|83719385\|ref\|YP_441766.1\| gluconate permease, putative [Burkholderia thailandensis E264], gi\|8365...	2.0E-76	[4..441]	[8..453]
gi\|104781532, gi... - gi\|95110519\|emb\|CAK15227.1\| putative gluconate permease (GntP family) [Pseudomonas entomophila L48],... gi\|95110519 - gi\|95110519\|emb\|CAK15227.1\| putative gluconate permease (GntP family) [Pseudomonas entomophila L48]	3.0E-76	[2..441]	[7..450]
gi\|26990130, gi\|... - gi\|26990130\|ref\|NP_745555.1\| gluconate transporter [Pseudomonas putida KT2440], gi\|24985064\|gb\|AAN69...	3.0E-76	[2..441]	[7..450]
gi\|126355674, gi... - gi\|167033527\|ref\|YP_001668758.1\| gluconate transporter [Pseudomonas putida GB-1], gi\|166860015\|gb\|AB... tr\|I7CGQ6\|I7CGQ6... - Gluconate transporter OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_5208 PE=4 SV=1 gi\|82717400, gi\|... - gi\|82735767\|ref\|ZP_00898629.1\| Gluconate transporter [Pseudomonas putida F1], gi\|82717400\|gb\|EAP5245...	3.0E-76	[2..441]	[7..450]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMYLLMITL LSIVIVILGV SWWRWHAFIS LTIASLFLAI MSGMPMDKIV SAYETGVGSV  60
   61 LGHLVGILVL GTILGKMMAE SGAGMQVAEF FIKSFGIKNL PWAMLIAGFI IGIPVFFEVG 120
  121 ILILLPLVIS IHKTTKQNIL LIALPAIAGL SVV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [154-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HGLVPSHPGA IVAIGIYKAN LGKVLLYSLI ITFFAAIIAG PIFAKWIHKR VIPENEPELI  60
   61 RVNTKSTKLP GIGVSFLVIL LPVMLMVLAA AAPYVPL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [251-441]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STTLMKIVTL IGSPIIALLI ACFAAFYFLG FRQGIDKKAI KKVTEDSLLP IGSIVAIIGA  60
   61 GGGFKQILID SGVGNAIAQM SEHLALSPIV LAFMVAGLIR IATGSATVAL TTAAGIVSPI 120
  121 VENTTGVNLE LLVIATGAGA LMFSHVNDAG FWMVKEYLGL TVKETFKTWT VLETLLSFIA 180
  181 FGGVLLLDMF I

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits