YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49180171, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49180171, gi|....

Description	E-value	Query Range	Subject Range
gi\|110603650, gi... - gi\|110603650\|ref\|ZP_01391726.1\| daunorubicin resistance ABC transporter membrane protein [Methanocul...	1.0E-46	[5..246]	[347..589]
gi\|18152891 - gi\|18152891\|gb\|AAK62810.2\|AF227914_1 ATP-binding cassette transporter ABC1 [Venturia inaequalis]	4.0E-40	[3..248]	[530..776]
gi\|5714366 - gi\|5714366\|dbj\|BAA83106.1\| ABC transporter [Drosophila melanogaster]	6.0E-39	[2..248]	[558..828]
gi\|49122482, gi\|... - gi\|67902714\|ref\|XP_681613.1\| hypothetical protein AN8344.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	4.0E-38	[2..222]	[468..687]
gi\|119176010, gi... - gi\|90298929\|gb\|EAS28560.1\| hypothetical protein CIMG_09764 [Coccidioides immitis RS], gi\|119176010\|r...	4.0E-38	[3..228]	[518..742]
gi\|54645443, gi\|... - gi\|54645443\|gb\|EAL34182.1\| GA15545-PA [Drosophila pseudoobscura], gi\|125986706\|ref\|XP_001357116.1\| G...	4.0E-38	[2..248]	[508..778]
gi\|118379544 - gi\|118379544\|ref\|XP_001022938.1\| protein-L-isoaspartate O-methyltransferase [Tetrahymena thermophila... gi\|89304705, gi\|... - gi\|89304705\|gb\|EAS02693.1\| protein-L-isoaspartate O-methyltransferase [Tetrahymena thermophila SB210...	5.0E-38	[3..246]	[343..600]
gi\|115437050, gi... - gi\|115437050\|ref\|XP_001217713.1\| hypothetical protein ATEG_09091 [Aspergillus terreus NIH2624], gi\|1...	6.0E-38	[4..229]	[433..657]

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Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSKTGVLLG RLMRNIMRSP DTIITVAITP IMMMLLFVYV FGGAIQTGTD NYVNYLLPGI  60
   61 LLMAIASGVA YTSVRLFTDV KSGLMARFIT MPIKRSSILW AHVLTSLVAN VLTILVVILV 120
  121 ALLMGFRSSA NILDWLGVAG ILGMFTLALT WLAIIPGLTA KSMEGATAYS YPLVFLPFIS 180
  181 SAFVPTETMP KIVRVFAENQ PVTSIVNAVR ALLYEGTVGN DIWIALTWCV GIMIISYFFA 240
  241 SKAFKRQIG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
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Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits