YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263584, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	150 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263584, gi|....

Description	E-value	Query Range	Subject Range
gi\|42738642, gi\|... - gi\|42782716\|ref\|NP_979963.1\| N-acetylmuramoyl-L-alanine amidase, putative [Bacillus cereus ATCC 1098...	2.0E-41	[1..150]	[1..150]
gi\|49331007, gi\|... - gi\|49479451\|ref\|YP_037711.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus thuringiensis serovar konk...	2.0E-40	[1..150]	[1..150]
gi\|51975373, gi\|... - gi\|52141904\|ref\|YP_084925.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus cereus E33L], gi\|51975373\|...	2.0E-40	[1..150]	[1..150]
gi\|229128908, gi... - gi\|229128908\|ref\|ZP_04257884.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus cereus BDRD-Cer4], gi\|2... gi\|30021735, gi\|... - gi\|30021735\|ref\|NP_833366.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus cereus ATCC 14579], gi\|298...	3.0E-40	[1..150]	[1..150]
gi\|228857560, gi... - gi\|228902134\|ref\|ZP_04066298.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus thuringiensis IBL 4222]... gi\|75762764, gi\|... - gi\|75762764\|ref\|ZP_00742593.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus thuringiensis serovar is... gi\|218542912, gi... - gi\|218898728\|ref\|YP_002447139.1\| putative N-acetylmuramoyl-L-alanine amidase [Bacillus cereus G9842]...	1.0E-39	[1..150]	[1..150]
gi\|47555399, gi\|... - gi\|47567921\|ref\|ZP_00238628.1\| N-acetylmuramoyl-L-alanine amidase, putative [Bacillus cereus G9241],...	2.0E-39	[1..150]	[1..150]
gi\|89153740, gi\|... - gi\|89208345\|ref\|ZP_01186857.1\| N-acetylmuramoyl-L-alanine amidase, family 2 [Bacillus weihenstephane...	3.0E-39	[1..150]	[1..150]
gi\|152024779, gi... - gi\|89202549\|ref\|ZP_01181266.1\| N-acetylmuramoyl-L-alanine amidase, family 2 [Bacillus cereus subsp. ...	2.0E-37	[1..150]	[6..155]
gi\|14625834 - gi\|14625834\|gb\|AAK71527.1\|AF298871_1 N-acetyl-anhydromuramyl-L-alanine amidase variant 3 [Enterobact...	2.0E-36	[1..150]	[9..179]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIKCVNLAF QDELVPLEKV NKLIIHHTSE DVRDVYQTHE FHQKVRGWSG IGYNYFIEED  60
   61 GTVVEGRGLH IGAHAKEYNR DTIGICMTGN FDKYDPTPPQ MNAVYSLCKM FMKQFSIEKG 120
  121 NVLGHRELEG VTKTCPGNRF SMVELRNLLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.154902
Match:	1j3gA
Description:	AmpD protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
N-acetylmuramoyl-L-alanine amidase activity	5.24309205254681	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	3.80195358174059	bayes_pls_golite062009
catalytic activity	0.998996028203371	bayes_pls_golite062009
hydrolase activity	0.83639977289922	bayes_pls_golite062009
binding	0.528043510871228	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.0631264776586918	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: