YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258233, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	505 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258233, gi|....

Description	E-value	Query Range	Subject Range
gi\|7798554 - gi\|7798554\|dbj\|BAA95629.1\| phenylalanine ammonia lyase [Catharanthus roseus]	0.0	[1..480]	[54..558]
gi\|14486430 - gi\|14486430\|gb\|AAK62030.1\| phenylalanine ammonia-lyase 1 [Manihot esculenta]	0.0	[1..480]	[49..552]
HUTH_BACC1 - Histidine ammonia-lyase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=hutH PE=3 SV=1	0.0	[1..505]	[1..505]
gi\|71277049 - gi\|71277049\|gb\|AAZ29735.1\| phenylalanine ammonia lyase [Trifolium pratense]	0.0	[1..480]	[65..567]
PALY_POPTR - Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1 gi\|169454, gi\|541843 - gi\|541843\|pir\|\|JQ2265 phenylalanine ammonia-lyase (EC 4.3.1.5) - western balsam poplar x cottonwood,...	0.0	[1..480]	[53..557]
PAL1_TOBAC - Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1	0.0	[1..480]	[51..557]
PALY_CITLI - Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1	0.0	[1..480]	[59..562]
gi\|228902150, gi... - gi\|228902150\|ref\|ZP_04066314.1\| Histidine ammonia-lyase [Bacillus thuringiensis IBL 4222], gi\|228857... gi\|74490445, gi\|... - gi\|75762072\|ref\|ZP_00741980.1\| Histidine ammonia-lyase [Bacillus thuringiensis serovar israelensis A... HUTH_BACC2 - Histidine ammonia-lyase OS=Bacillus cereus (strain G9842) GN=hutH PE=3 SV=1	0.0	[1..505]	[1..505]
PAL1_PRUAV - Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=PAL1 PE=2 SV=1	0.0	[1..480]	[56..559]

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Predicted Domain #1

Region A:
Residues: [1-505]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITLTGHTLT IEEMKRLLLE GEGVTACPTS MQKVAECREV VEKIVENGKV VYGITTGFGK  60
   61 FSDVLIQKDD VKALQHNLIQ SHACGIGDPF PEEVSRGMLI LRANTMLKGV SGVRPLVVNM 120
  121 LLEFVNRKIH PVVPQQGSLG ASGDLAPLSH LALILLGEGE VFYKGKRVHA MVALTEEGLE 180
  181 PIELEAKEGL ALINGTQAMT AQGVLSYIEA EATAYQAELI ASMTIEGLQG IIDAFDENVH 240
  241 KARGYKEQVE VASRIRDILH DSKLTTKQGE LRVQDAYSLR CIPQVHGASW QVLNYVKEKL 300
  301 EIEMNAATDN PLIFDGGEKV ISGGNFHGQP IAFAMDFLKV GMAELANISE RRIERLVNPQ 360
  361 LNDLPPFLSP EPGLQSGAMI MQYAAASLVS ENKTLAHPAS VDSIPSSANQ EDHVSMGTIA 420
  421 SRHAHQIIQN VRRVLSIEMI CAMQAAEYRG IENMSTVTKS FYHQGRQQVP SITNDRIFST 480
  481 DIENITHWLK TNYSIKERLD VNAAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1w27A
Description:	Phenylalanine ammonia-lyase (PAL) from Petroselinum crispum
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
histidine ammonia-lyase activity	3.53226750625841	bayes_pls_golite062009
catalytic activity	2.51282259572665	bayes_pls_golite062009
lyase activity	2.31268471569846	bayes_pls_golite062009
carbon-nitrogen lyase activity	2.2046475419807	bayes_pls_golite062009
amidine-lyase activity	0.901614580251298	bayes_pls_golite062009
argininosuccinate lyase activity	0.617974375213548	bayes_pls_golite062009
ammonia-lyase activity	0.491229595527877	bayes_pls_golite062009
fumarate hydratase activity	0.364320954362762	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: