YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263714, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	321 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263714, gi|....

Description	E-value	Query Range	Subject Range
gi\|77545197, gi\|... - gi\|77919114\|ref\|YP_356929.1\| site-specific recombinase [Pelobacter carbinolicus DSM 2380], gi\|775451...	1.0E-50	[6..320]	[1..287]
gi\|82701881, gi\|... - gi\|82701881\|ref\|YP_411447.1\| tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196], gi\|824...	8.0E-49	[7..320]	[8..295]
gi\|153167810, gi... - gi\|153167810\|ref\|ZP_01927895.1\| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017], gi\|13... gi\|254992940 - gi\|254992940\|ref\|ZP_05275130.1\| integrase/recombinase [Listeria monocytogenes FSL J2-064] gi\|153202948, gi... - gi\|254931873\|ref\|ZP_05265232.1\| integrase/recombinase [Listeria monocytogenes HPB2262], gi\|153202948... gi\|254877926 - gi\|254877926\|ref\|ZP_05250636.1\| integrase/recombinase [Listeria monocytogenes FSL J2-071] gi\|255520096 - gi\|255520096\|ref\|ZP_05387333.1\| integrase/recombinase [Listeria monocytogenes FSL J1-175] XERD_LISMF - Tyrosine recombinase XerD OS=Listeria monocytogenes serotype 4b (strain F2365) GN=xerD PE=3 SV=1 gi\|47093384, gi\|... - gi\|47093384\|ref\|ZP_00231151.1\| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858], gi... gi\|226224560, gi... - gi\|226224560\|ref\|YP_002758667.1\| integrase/recombinase [Listeria monocytogenes Clip81459], gi\|225877... gi\|254852857 - gi\|254852857\|ref\|ZP_05242205.1\| integrase/recombinase [Listeria monocytogenes FSL R2-503] gi\|254825549 - gi\|254825549\|ref\|ZP_05230550.1\| integrase/recombinase [Listeria monocytogenes FSL J1-194]	2.0E-48	[6..320]	[1..289]
XERD_COREF - Tyrosine recombinase xerD OS=Corynebacterium efficiens GN=xerD PE=3 SV=1 XERD_COREF - Tyrosine recombinase XerD OS=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 1...	2.0E-48	[4..320]	[1..296]
gi\|83573258, gi\|... - gi\|83590344\|ref\|YP_430353.1\| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC 39073], ...	2.0E-48	[6..320]	[1..287]
gi\|89152781, gi\|... - gi\|89209284\|ref\|ZP_01187725.1\| Tyrosine recombinase XerC [Bacillus weihenstephanensis KBAB4], gi\|891... gi\|229134638, gi... - gi\|229134638\|ref\|ZP_04263448.1\| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST196], gi\|228648899... gi\|228748268, gi... - gi\|229013014\|ref\|ZP_04170179.1\| Tyrosine recombinase xerC [Bacillus mycoides DSM 2048], gi\|228748268... gi\|228614976, gi... - gi\|229168570\|ref\|ZP_04296293.1\| Tyrosine recombinase xerC [Bacillus cereus AH621], gi\|228614976\|gb\|E...	2.0E-48	[3..320]	[2..293]
gi\|53756170, gi\|... - gi\|53802409\|ref\|YP_112927.1\| tyrosine recombinase XerD [Methylococcus capsulatus str. Bath], gi\|5375...	3.0E-48	[9..320]	[18..301]
gi\|51892959, gi\|... - gi\|51892959\|ref\|YP_075650.1\| recombinase [Symbiobacterium thermophilum IAM 14863], gi\|51856648\|dbj\|B...	3.0E-48	[6..320]	[1..286]
gi\|254912513, gi... - gi\|254912513\|ref\|ZP_05262525.1\| hypothetical protein LmonJ2_06931 [Listeria monocytogenes J2818], gi... gi\|133729635, gi... - gi\|254827160\|ref\|ZP_05231847.1\| hypothetical protein LmonocytogeFSL_01770 [Listeria monocytogenes FS... XERD_LISMO - Tyrosine recombinase xerD OS=Listeria monocytogenes GN=xerD PE=3 SV=1 gi\|254936840 - gi\|254936840\|ref\|ZP_05268537.1\| hypothetical protein LmonF6_06921 [Listeria monocytogenes F6900] gi\|47097098, gi\|... - gi\|47097098\|ref\|ZP_00234668.1\| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854], ... gi\|255028942 - gi\|255028942\|ref\|ZP_05300893.1\| hypothetical protein LmonL_06711 [Listeria monocytogenes LO28] XERD_LISMO - Tyrosine recombinase XerD OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=xe... gi\|224498595 - gi\|224498595\|ref\|ZP_03666944.1\| hypothetical protein LmonF1_02414 [Listeria monocytogenes Finland 19... gi\|224501245 - gi\|224501245\|ref\|ZP_03669552.1\| hypothetical protein LmonFR_01770 [Listeria monocytogenes FSL R2-561... gi\|254899348, gi... - gi\|254899348\|ref\|ZP_05259272.1\| hypothetical protein LmonJ_06029 [Listeria monocytogenes J0161], gi\|...	3.0E-48	[6..320]	[1..289]
gi\|85667369 - gi\|85667369\|ref\|ZP_01029588.1\| hypothetical protein Badol_01000282 [Bifidobacterium adolescentis]	5.0E-48	[1..319]	[1..307]

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Predicted Domain #1

Region A:
Residues: [1-321]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METTEFHDTI QAFSIFLLNK GRKPSTIKRY VYDIEDFGHW LEKNKKLPSS NIWATLCTKD  60
   61 YEDYFSDLKK NRHYSEKTMH RVFIVLNRMH HFLNIPNPLK NMEISIQPDR TLRNEDFISS 120
  121 DEEKRLKHIV TSLEGLSEKQ RPVRPLLMDR NIAILNLLID YGLSLQELTA LTMHHVHFET 180
  181 NTLSIPATAG VERTISLTSE DKKQLYTYYK SIPEPVRPKY HSNDPLFVAF DFNRGTYRWV 240
  241 YENDAPKGLT EIAIQKMIRL EVSRANLRKG ISGQHFRNTY ILNLIKKETP ESEIIKLAGF 300
  301 KSKISLKRYY QYAENGKNAL S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.39794
Match:	1a0pA
Description:	SITE-SPECIFIC RECOMBINASE, XERD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
site-specific recombinase activity	4.99325011803106	bayes_pls_golite062009
catalytic activity	2.22520758916604	bayes_pls_golite062009
integrase activity	1.98780702210031	bayes_pls_golite062009
structure-specific DNA binding	0.11292854906722	bayes_pls_golite062009
DNA binding	0.10970863758177	bayes_pls_golite062009
nucleic acid binding	0.06580979261817	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: