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View Structure Prediction Details

Protein: gi|30259572, gi|...
Organism: Bacillus anthracis str. Ames
Length: 649 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259572, gi|....

Description E-value Query
Range
Subject
Range
gi|29898458, gi|... - gi|30022899|ref|NP_834530.1| ABC transporter permease protein [Bacillus cereus ATCC 14579], gi|29898...
9.0E-72 [1..649] [1..649]
gi|52140675, gi|... - gi|52140675|ref|YP_086155.1| ABC transporter, permease [Bacillus cereus E33L], gi|51974144|gb|AAU156...
4.0E-70 [1..649] [1..649]
gi|42784030, gi|... - gi|42784030|ref|NP_981277.1| ABC transporter, permease protein [Bacillus cereus ATCC 10987], gi|4273...
6.0E-70 [1..649] [1..649]
gi|49478778, gi|... - gi|49478778|ref|YP_038876.1| ABC transporter, permease [Bacillus thuringiensis serovar konkukian str...
1.0E-69 [1..649] [1..649]
gi|89157899, gi|... - gi|89204326|ref|ZP_01182904.1| Protein of unknown function DUF214 [Bacillus weihenstephanensis KBAB4...
1.0E-69 [1..649] [1..649]
gi|47555307, gi|... - gi|47568004|ref|ZP_00238710.1| permease protein, putative [Bacillus cereus G9241], gi|47555307|gb|EA...
1.0E-68 [1..649] [1..637]
gi|75759279, gi|... - gi|75759279|ref|ZP_00739378.1| ABC transporter permease protein [Bacillus thuringiensis serovar isra...
1.0E-67 [1..649] [1..649]
gi|65322195 - gi|65322195|ref|ZP_00395154.1| COG0577: ABC-type antimicrobial peptide transport system, permease co...
2.0E-62 [25..649] [1..625]

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Predicted Domain #1
Region A:
Residues: [1-258]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLSSIALRN IQRNFKDYFV YFASMIFSIV IYFTFKALQY NSQMEKAAEA SKKISGAFQV  60
   61 SSVMLIIFVA VFIIYSNGFF TRKRKKEVGL YSLLGIRKRQ IGKMLFYENM LMGLMSLIIG 120
  121 IAIGSVLSKL FLELLVSMMG LKLNVHFEVP MAAIVDTAII FFVIILYTSL QGYRLIYRFK 180
  181 LIELFRAERE GEAMPKGSVI MALISVFLIG SGYFLALMYM KAVMYADFMV VALYILLATV 240
  241 AGTYLLFMFF TVFILKRA

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 4.508638
Match: PF02687.12
Description: No description for PF02687.12 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [259-425]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNNKSAFYNG MNMVTTSQLL YRIKGNAKSL ATIAILSAVT LTAVGTSVTM YYNTFTQSKV  60
   61 AAPYSYSYEK KDEALDKKVN EILAGEKNNH PVTYESEFEM IPVKGTFKGE RADQVLNTHY 120
  121 NVTKQYQLIS QSNFNTIAKH LDIEPVNLSA NEAFVYDSLY IETLDFG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.329 d.109.1 Actin depolymerizing proteins
View Download 0.273 d.218.1 Nucleotidyltransferase
View Download 0.253 c.97.1 Cytidine deaminase-like
View Download 0.229 d.97.1 Cell cycle regulatory proteins

Predicted Domain #3
Region A:
Residues: [426-649]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLYTGNTAVF PVGNESKELK IKGVNSRSVT NLNELFVIVP DQTYEQAKQV NETRIVKNID  60
   61 VKGERNSKEL TAKLASVMPA GESEILKPFH DFYTGFQTGL ETTGLMMFIG LFLGLVFLLA 120
  121 TGSIIYFKQL TEASADRDRY VVLHKVGVTK QEMKKAIAKQ VSFIFAIPLV IGILHSLFAL 180
  181 KGLGNILPYE IMIPLLISIG VYGVIYIGYY FLTVRSYYKI VSAK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle