YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30265006, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30265006, gi|....

Description	E-value	Query Range	Subject Range
gi\|75761954, gi\|... - gi\|75761954\|ref\|ZP_00741874.1\| Transcriptional activator tipA [Bacillus thuringiensis serovar israel...	2.0E-69	[1..243]	[23..265]
gi\|42784150, gi\|... - gi\|42784150\|ref\|NP_981397.1\| transcriptional activator tipA, putative [Bacillus cereus ATCC 10987], ...	1.0E-67	[1..243]	[1..243]
gi\|49332586, gi\|... - gi\|49481030\|ref\|YP_038987.1\| transcriptional activator [Bacillus thuringiensis serovar konkukian str... gi\|228917593, gi... - gi\|228917593\|ref\|ZP_04081137.1\| Transcriptional activator tipA [Bacillus thuringiensis serovar pulsi...	1.0E-67	[1..243]	[1..243]
gi\|52140564, gi\|... - gi\|52140564\|ref\|YP_086265.1\| transcriptional activator [Bacillus cereus E33L], gi\|51974033\|gb\|AAU155...	9.0E-67	[1..243]	[1..243]
gi\|65316958, gi\|... - gi\|65316958\|ref\|ZP_00389917.1\| COG0789: Predicted transcriptional regulators [Bacillus anthracis str...	1.0E-66	[1..243]	[1..243]
gi\|47567004, gi\|... - gi\|47567004\|ref\|ZP_00237721.1\| transcriptional regulator, merR family [Bacillus cereus G9241], gi\|47...	2.0E-66	[2..243]	[24..265]
gi\|29898568, gi\|... - gi\|30023008\|ref\|NP_834639.1\| transcriptional activator tipA [Bacillus cereus ATCC 14579], gi\|2989856...	2.0E-66	[1..243]	[1..243]
gi\|163864882, gi... - gi\|89206056\|ref\|ZP_01184619.1\| regulatory protein, MerR:Bacterial regulatory protein, MerR [Bacillus...	9.0E-65	[3..243]	[1..241]
gi\|89200200, gi\|... - gi\|89200200\|ref\|ZP_01178955.1\| regulatory protein, MerR:Bacterial regulatory protein, MerR [Bacillus...	1.0E-63	[1..242]	[1..242]
gi\|89096892, gi\|... - gi\|89096892\|ref\|ZP_01169783.1\| transcriptional activator [Bacillus sp. NRRL B-14911], gi\|89088272\|gb...	3.0E-59	[1..243]	[1..247]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMKVKEVAN LVGISVRTLH HYDEIGLLTP DETTESGYRL YSNENLEMLQ QILFFKELGF  60
   61 PLKKIKEIIM SPSFDRKEAL QLHKKMLLEK RARLDKVIAT IDKTIQHTKG EIEMTNKEKF 120
  121 KGF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.39794
Match:	1jbgA
Description:	Multidrug transporter activator MtaN
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	3.40729334364274	bayes_pls_golite062009
DNA binding	2.05877861880033	bayes_pls_golite062009
nucleic acid binding	1.99474406643819	bayes_pls_golite062009
transcription factor activity	1.84836087644732	bayes_pls_golite062009
binding	1.32395331736751	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [124-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DFSHNPYEEE ARERWGDAAV DKANEYAKGM SKEKQEEFNA IYRNLAALRH GAPDSKEAQE  60
   61 AIKVWYDYLQ NFSHYSLDAF KGLGQMYVAD ERFTKNIDKF GEGLAQFMCD AMEVYADRNK 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.39794
Match:	1ny9A
Description:	Transcriptional activator TipA-S
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: