YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30265205, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	544 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30265205, gi|....

Description	E-value	Query Range	Subject Range
gi\|56478652, gi\|... - gi\|56478652\|ref\|YP_160241.1\| ABC transporter, ATP-binding protein [Aromatoleum aromaticum EbN1], gi\|...	2.0E-99	[2..543]	[39..692]
gi\|71906952, gi\|... - gi\|71906952\|ref\|YP_284539.1\| oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal...	3.0E-97	[3..542]	[1..645]
gi\|74317686, gi\|... - gi\|74317686\|ref\|YP_315426.1\| oligopeptidee ABC transporter, ATP-binding protein [Thiobacillus denitr...	2.0E-96	[2..539]	[3..639]
gi\|110287047, gi... - gi\|69275647\|ref\|ZP_00611395.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin...	5.0E-96	[2..541]	[4..640]
gi\|88810740, gi\|... - gi\|88810740\|ref\|ZP_01125997.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like [Nit...	2.0E-95	[2..538]	[4..652]
gi\|51855912, gi\|... - gi\|51892223\|ref\|YP_074914.1\| ABC transporter ATP-binding protein [Symbiobacterium thermophilum IAM 1...	9.0E-94	[1..543]	[1..559]
gi\|69133432, gi\|... - gi\|99078093\|ref\|YP_611351.1\| oligopeptide/dipeptide ABC transporter, ATP-binding protein-like [Silic...	3.0E-93	[2..541]	[3..653]
gi\|71915763, gi\|... - gi\|72162031\|ref\|YP_289688.1\| oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal... gi\|48837424 - ref\|ZP_00294419.1\| COG1123: ATPase components of various ABC-type transport systems, contain duplica...	4.0E-93	[2..540]	[18..682]
gi\|145306185, gi... - gi\|145596848\|ref\|YP_001161145.1\| oligopeptide/dipeptide ABC transporter, ATPase subunit [Salinispora...	6.0E-93	[2..538]	[23..679]

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Predicted Domain #1

Region A:
Residues: [1-478]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTILFARNIE KGFGDRTLFT LPSLEIQAQD RIGIVGVNGA GKSTLLQILS KEIEADKGIV  60
   61 THHSSISIIP QISEELPKVA SSTAKGKWNI SNISNSMSGG ERMRLKIAHA LEQDAGILFA 120
  121 DEPTSHLDMF GTEQLEKALL SYKGALVLIS HDREFLDNIC TKIIEIEDGI IQEYKGNYSN 180
  181 YRKQKERERT QKQAEYEQYI NEKERLEKSI LQKKQRASSM TKIPTRFSSS ESKLYKLSGA 240
  241 NGQEQVSKAA KALETRLEKL EKKEKPKELS QAQFDVQYHT PIHSKVAVQF NKATKKIGDL 300
  301 TLFKNMNGTI APGAKLAILG ANGSGKTTLF NMLLANERGI QLSKSCKIGY FEQTLSILKT 360
  361 DKTILENVLE ETNYTESFVR TILARLLFRR EDVHKPVHVL SGGERMKVAL AKVFLGNYNM 420
  421 LLLDEPTNYL DLATQEELES MLQEYPGTIL FISHDRAFIR SVADHILQVD ESEPRVFH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.221849
Match:	2iw3A
Description:	No description for 2iw3A was found.

Predicted Domain #2

Region A:
Residues: [479-544]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNYEQYTNRT ADASVNVTAQ ELLRLQTKLT EIIGRISIPN HHDDITSLEQ EYETLLVKIR  60
   61 KCKEAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.0
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits