YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30265396, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30265396, gi|....

Description	E-value	Query Range	Subject Range
gi\|223488779, gi... - gi\|254479407\|ref\|ZP_05092739.1\| Glycerophosphoryl diester phosphodiesterase family protein [Carboxyd... gi\|20807473 - gi\|20807473\|ref\|NP_622644.1\| Glycerophosphoryl diester phosphodiesterase [Thermoanaerobacter tengcon... gi\|20807473, gi\|... - gi\|20807473\|ref\|NP_622644.1\| glycerophosphoryl diester phosphodiesterase [Thermoanaerobacter tengcon...	2.0E-72	[3..240]	[2..239]
gi\|18144079, gi\|... - gi\|18309403\|ref\|NP_561337.1\| glycerophosphodiester phosphodiesterase [Clostridium perfringens str. 1...	5.0E-71	[1..240]	[1..240]
gi\|110800595, gi... - gi\|110800595\|ref\|YP_694881.1\| putative glycerophosphoryl diester phosphodiesterase [Clostridium perf...	9.0E-71	[1..240]	[1..240]
gi\|242257355, gi... - gi\|242257355\|ref\|ZP_04802223.1\| Glycerophosphodiester phosphodiesterase [Thermoanaerobacter sp. X513... gi\|241904084, gi... - gi\|241904084\|ref\|ZP_04788795.1\| Glycerophosphodiester phosphodiesterase [Thermoanaerobacter brockii ... gi\|114844053, gi... - gi\|167040045\|ref\|YP_001663030.1\| glycerophosphodiester phosphodiesterase [Thermoanaerobacter sp. X51... gi\|166856211, gi... - gi\|76797455\|ref\|ZP_00779769.1\| Glycerophosphodiester phosphodiesterase [Thermoanaerobacter ethanolic...	1.0E-70	[3..240]	[2..239]
gi\|89150508, gi\|... - gi\|89201456\|ref\|ZP_01180196.1\| Glycerophosphodiester phosphodiesterase [Bacillus cereus subsp. cytot...	8.0E-70	[1..241]	[1..241]
gi\|110801784, gi... - gi\|110801784\|ref\|YP_697749.1\| glycerophosphoryl diester phosphodiesterase [Clostridium perfringens S...	2.0E-69	[1..240]	[1..240]
gi\|74493974, gi\|... - gi\|75758540\|ref\|ZP_00738660.1\| Glycerophosphoryl diester phosphodiesterase [Bacillus thuringiensis s... gi\|228903852, gi... - gi\|228903852\|ref\|ZP_04067967.1\| Glycerophosphoryl diester phosphodiesterase [Bacillus thuringiensis ...	6.0E-69	[1..241]	[1..241]
gi\|196040947, gi... - gi\|196040947\|ref\|ZP_03108244.1\| glycerophosphoryl diester phosphodiesterase family protein [Bacillus... gi\|229187601, gi... - gi\|229187601\|ref\|ZP_04314739.1\| Glycerophosphoryl diester phosphodiesterase [Bacillus cereus BGSC 6E... gi\|225867356, gi... - gi\|225867356\|ref\|YP_002752734.1\| glycerophosphoryl diester phosphodiesterase family protein [Bacillu... gi\|118480404, gi... - gi\|118480404\|ref\|YP_897555.1\| glycerophosphodiester phosphodiesterase [Bacillus thuringiensis str. A... gi\|49331987, gi\|... - gi\|49480431\|ref\|YP_039364.1\| glycerophosphodiester phosphodiesterase (glycerophosphoryl diester phos...	7.0E-68	[1..241]	[1..241]
gi\|89156145, gi\|... - gi\|89205919\|ref\|ZP_01184484.1\| Glycerophosphodiester phosphodiesterase [Bacillus weihenstephanensis ... gi\|228647267, gi... - gi\|229136189\|ref\|ZP_04264941.1\| Glycerophosphoryl diester phosphodiesterase [Bacillus cereus BDRD-ST...	2.0E-67	[1..241]	[1..241]
gi\|42740480, gi\|... - gi\|42784548\|ref\|NP_981795.1\| glycerophosphoryl diester phosphodiesterase family protein [Bacillus ce...	2.0E-67	[1..241]	[1..241]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKPLIFAHR GVKGTHPENT MIAFQEAERI GAHGIELDVH LSKDGELVVI HDETVDRTTN  60
   61 GIGLVSEKTV EELQALDAGS HKDASFHEAK IPTLREVFIW LSTTNFQLNI ELKTDVIHYP 120
  121 NIEEKAVALV REYHLSNQIV FSSFNHESVS LLAEIAPEIP RAILYDTPLA DPIAEAKTRE 180
  181 ATGLHPNFQL LTKEFVQLAQ KQGYVFRPYT INEYKDLQTM LDYGVDVIIT DWPARAFELL 240
  241 S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.39794
Match:	2oogA
Description:	No description for 2oogA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits