YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49328248, gi\|...
Organism:	Bacillus thuringiensis serovar konkukian str. 97-27
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49328248, gi|....

Description	E-value	Query Range	Subject Range
gi\|228652438, gi... - gi\|229131026\|ref\|ZP_04259942.1\| hypothetical protein bcere0014_80 [Bacillus cereus BDRD-ST196], gi\|2... gi\|229053865, gi... - gi\|229053865\|ref\|ZP_04195302.1\| hypothetical protein bcere0026_80 [Bacillus cereus AH603], gi\|228721... gi\|89153509, gi\|... - gi\|89208562\|ref\|ZP_01187062.1\| Deoxynucleoside kinase [Bacillus weihenstephanensis KBAB4], gi\|891535... gi\|229165008, gi... - gi\|229165008\|ref\|ZP_04292806.1\| hypothetical protein bcere0007_80 [Bacillus cereus AH621], gi\|228618... gi\|228751740, gi... - gi\|229009529\|ref\|ZP_04166758.1\| hypothetical protein bmyco0001_80 [Bacillus mycoides DSM 2048], gi\|2...	2.0E-43	[1..222]	[1..222]
gi\|52145195, gi\|... - gi\|52145195\|ref\|YP_081633.1\| deoxynucleoside kinase [Bacillus cereus E33L], gi\|51978664\|gb\|AAU20214....	3.0E-43	[1..222]	[1..222]
gi\|89100959, gi\|... - gi\|89100959\|ref\|ZP_01173805.1\| deoxynucleoside kinase [Bacillus sp. NRRL B-14911], gi\|89084330\|gb\|EA...	3.0E-43	[1..222]	[1..222]
gi\|152973867, gi... - gi\|89203309\|ref\|ZP_01181990.1\| Deoxynucleoside kinase [Bacillus cereus subsp. cytotoxis NVH 391-98],...	6.0E-43	[1..222]	[1..222]
gi\|70727435, gi\|... - gi\|70727435\|ref\|YP_254351.1\| hypothetical protein SH2436 [Staphylococcus haemolyticus JCSC1435], gi\|...	2.0E-41	[5..220]	[2..217]
gi\|22775693, gi\|... - gi\|23097470\|ref\|NP_690936.1\| deoxypurine kinase subunit [Oceanobacillus iheyensis HTE831], gi\|227756...	8.0E-41	[1..222]	[1..222]
gi\|72495982, gi\|... - gi\|73663467\|ref\|YP_302248.1\| putative deoxyadenosine kinase [Staphylococcus saprophyticus subsp. sap...	1.0E-40	[5..222]	[2..219]
gi\|251809979, gi... - gi\|251809979\|ref\|ZP_04824452.1\| deoxynucleoside kinase [Staphylococcus epidermidis BCM-HMP0060], gi\|... gi\|242234673, gi... - gi\|242241895\|ref\|ZP_04796340.1\| deoxynucleoside kinase [Staphylococcus epidermidis W23144], gi\|24223... gi\|57636836, gi\|... - gi\|57866178\|ref\|YP_187798.1\| deoxynucleoside kinase family protein [Staphylococcus epidermidis RP62A...	2.0E-40	[5..220]	[2..217]
gi\|27467243, gi\|... - gi\|27467243\|ref\|NP_763880.1\| deoxypurine kinase [Staphylococcus epidermidis ATCC 12228], gi\|27314786...	4.0E-40	[5..220]	[2..217]
gi\|88806883, gi\|... - gi\|88806883\|ref\|ZP_01122399.1\| Deoxynucleoside kinase subfamily, putative [Robiginitalea biformata H...	6.0E-40	[9..217]	[68..274]

Back

Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLRQKYDIP NDAVITIAGT VGVGKSTMTT ALANALGYRT SFEKVDSNPY LDKFYADFTR  60
   61 WSFHLQVYFL AERFKEQKRI FEYGGGFVQD RSIYEDTGIF AKMHHEKGTM TETDYETYKG 120
  121 LFDAMVMTPY FPHPDLLIYL EGSFDDIVDR IQERGRPMEQ QTPIEYWKEM HGRYENWINN 180
  181 FNSCPVLRLN INEYDILKDG DSIEPIIKKI GHFLKQTRKL VK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.522879
Match:	2a2zA
Description:	Crystal Structure of human deoxycytidine kinase in complex with deoxycytidine and uridine diphosphate
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits