YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259192, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	444 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259192, gi|....

Description	E-value	Query Range	Subject Range
gi\|196039315, gi... - gi\|196039315\|ref\|ZP_03106621.1\| glutamyl-tRNA reductase [Bacillus cereus NVH0597-99], gi\|196029942\|g... HEM1_BACCZ - Glutamyl-tRNA reductase OS=Bacillus cereus (strain ZK / E33L) GN=hemA PE=3 SV=1	0.0	[1..444]	[1..444]
gi\|47556686, gi\|... - gi\|47566656\|ref\|ZP_00237478.1\| glutamyl-tRNA reductase [Bacillus cereus G9241], gi\|47556686\|gb\|EAL15... gi\|229158084, gi... - gi\|229158084\|ref\|ZP_04286154.1\| Glutamyl-tRNA reductase [Bacillus cereus ATCC 4342], gi\|228625403\|gb... gi\|228987718, gi... - gi\|228987718\|ref\|ZP_04147829.1\| Glutamyl-tRNA reductase [Bacillus thuringiensis serovar tochigiensis...	0.0	[1..444]	[1..444]
HEM1_BACC1 - Glutamyl-tRNA reductase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=hemA PE=3 SV=1	0.0	[1..444]	[1..444]
HEM1_BACME - Glutamyl-tRNA reductase OS=Bacillus megaterium GN=hemA PE=3 SV=1	0.0	[1..441]	[1..442]
gi\|228902995, gi... - gi\|228902995\|ref\|ZP_04067135.1\| Glutamyl-tRNA reductase [Bacillus thuringiensis IBL 4222], gi\|228856... gi\|75759965, gi\|... - gi\|75759965\|ref\|ZP_00740034.1\| Glutamyl-tRNA reductase [Bacillus thuringiensis serovar israelensis A...	0.0	[1..444]	[1..444]
HEM1_BACCR - Glutamyl-tRNA reductase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCI...	0.0	[1..444]	[1..444]
HEM1_GEOSL - Glutamyl-tRNA reductase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=hemA PE... HEM1_GEOSL - Glutamyl-tRNA reductase OS=Geobacter sulfurreducens GN=hemA PE=3 SV=1	0.0	[1..427]	[1..427]
HEM1_BACCN - Glutamyl-tRNA reductase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98...	0.0	[1..444]	[1..444]
HEM1_GEOUR - Glutamyl-tRNA reductase OS=Geobacter uraniireducens (strain Rf4) GN=hemA PE=3 SV=1	0.0	[1..422]	[1..422]
HEM1_GEOKA - Glutamyl-tRNA reductase OS=Geobacillus kaustophilus (strain HTA426) GN=hemA PE=3 SV=1 HEM1_GEOKA - Glutamyl-tRNA reductase OS=Geobacillus kaustophilus GN=hemA PE=3 SV=1	0.0	[1..439]	[1..440]

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Predicted Domain #1

Region A:
Residues: [1-444]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHILVVSVNY RTAPVEFREK LTFQAAELER AMTTLQNQKS VLENVIVSTC NRTEIYAVVD  60
   61 QLHTGRYYIK KFLADWFQLE IEEVAPYLTI FEQDGAIDHL FRVTCGLDSM VVGETQILGQ 120
  121 IKDSFLEAQQ VKATGTIFNE LFKQVITLAK RAHSETTIGE SAMSVSYAAV ELGKKIFGEL 180
  181 TDCHVLILGA GKMGELALQN LYGSGARKVT VMNRTLSKAE IMAEKYMGHA KPLSELQCAL 240
  241 LEADILISST GASDYVITKE MMTKVEKMRS GRPLFMVDIA VPRDIDPAID ELEGSFLYDI 300
  301 DDLQGVVEAN RAERLKEAEK IQFMIEEEIV LFKTWLSTLG VVPLISALRD KALAIQSETM 360
  361 ESLERKIPNL SDRERKVISK HTKSIINQLL KDPILVAKEI AAEEGADEKL ALFAKIFDLE 420
  421 MEDVESRAEE VEHKRVWTPS VPSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.69897
Match:	1gpjA
Description:	Glutamyl tRNA-reductase dimerization domain; Glutamyl tRNA-reductase middle domain; Glutamyl tRNA-reductase catalytic, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.79741889688267	bayes_pls_golite062009
oxidoreductase activity	0.881088609158401	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: