YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262759, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	285 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262759, gi|....

Description	E-value	Query Range	Subject Range
gi\|47569051, gi\|... - gi\|47569051\|ref\|ZP_00239741.1\| amino acid ABC transporter, permease protein [Bacillus cereus G9241],...	2.0E-53	[1..285]	[1..285]
gi\|52142723, gi\|... - gi\|52142723\|ref\|YP_084106.1\| glycine betaine-binding protein [Bacillus cereus E33L], gi\|51976192\|gb\|...	3.0E-53	[1..285]	[1..285]
gi\|29896466, gi\|... - gi\|30020913\|ref\|NP_832544.1\| glycine betaine-binding protein [Bacillus cereus ATCC 14579], gi\|298964...	4.0E-53	[1..285]	[1..285]
gi\|89207416, gi\|... - gi\|89207416\|ref\|ZP_01185958.1\| Substrate-binding region of ABC-type glycine betaine transport system...	2.0E-52	[1..285]	[1..285]
gi\|152024426, gi... - gi\|89202320\|ref\|ZP_01181046.1\| Substrate-binding region of ABC-type glycine betaine transport system...	1.0E-50	[1..285]	[1..285]
gi\|91772544, gi\|... - gi\|91772544\|ref\|YP_565236.1\| ABC glycine betaine/L-proline transporter, substrate-binding subunit [M...	4.0E-48	[1..285]	[1..289]
gi\|113728153, gi... - gi\|113873481\|ref\|ZP_01413610.1\| ABC-type proline/glycine betaine transport systems periplasmic compo...	1.0E-47	[1..284]	[203..496]
gi\|219538600, gi... - gi\|68205694\|ref\|ZP_00557894.1\| Substrate-binding region of ABC-type glycine betaine transport system... gi\|89333413, gi\|... - gi\|89893965\|ref\|YP_517452.1\| hypothetical protein DSY1219 [Desulfitobacterium hafniense Y51], gi\|893...	2.0E-47	[4..284]	[9..298]
gi\|107104480 - gi\|107104480\|ref\|ZP_01368398.1\| hypothetical protein PaerPA_01005557 [Pseudomonas aeruginosa PACS2] gi\|218894481, gi... - gi\|218894481\|ref\|YP_002443351.1\| putative glycine betaine/L-proline ABC transporter, periplasmic com... gi\|53726791, gi\|... - gi\|53726791\|ref\|ZP_00140201.2\| COG2113: ABC-type proline/glycine betaine transport systems, periplas... gi\|15600571, gi\|... - gi\|9951701\|gb\|AAG08763.1\|AE004950_6 hypothetical protein PA5378 [Pseudomonas aeruginosa PAO1], gi\|15... gi\|194548921, gi... - gi\|84318038\|ref\|ZP_00966468.1\| COG2113: ABC-type proline/glycine betaine transport systems, periplas... gi\|11350430 - pir\|\|C82974 hypothetical protein PA5378 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|126196308, gi... - gi\|84324959\|ref\|ZP_00973010.1\| COG2113: ABC-type proline/glycine betaine transport systems, periplas...	5.0E-47	[10..283]	[8..291]
gi\|125861736, gi... - gi\|126178942\|ref\|YP_001046907.1\| substrate-binding region of ABC-type glycine betaine transport syst...	8.0E-47	[1..285]	[1..288]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKKIWFICL ALFITMIFTS CNATNANSKG KIKLGVTSWK ENIATANMWK VLLEQKGYKV  60
   61 ELMYLEKAAI WTGVARGDVD ANLEVWLPVT DKPLNDRYKD DIVLKSKWYE GTGLGLVVPS 120
  121 YMKNISSIED LNAHKDELDN KIVGIE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.18
Match:	2b4lA
Description:	No description for 2b4lA was found.

Predicted Domain #2

Region A:
Residues: [147-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGSSLMNLTN KAMKEYDIKL KLVQSSEAAL MSELKKAYTK KKPIAVTLWN PHWGFSEFDL  60
   61 KYLKDPKKVY GEKDDIYYSV RKGFEKDHPD IIKYFDKWKM NDEQLGTLMV ELNKTKDPEE 120
  121 AARKWIKKNQ ALVDEWIKD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.522879
Match:	2b4lA
Description:	No description for 2b4lA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits