YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263082, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263082, gi|....

Description	E-value	Query Range	Subject Range
gi\|52142395, gi\|... - gi\|52142395\|ref\|YP_084434.1\| ans operon repressor protein [Bacillus cereus E33L], gi\|51975864\|gb\|AAU...	2.0E-21	[1..125]	[1..125]
gi\|218540854, gi... - gi\|218898185\|ref\|YP_002446596.1\| transcriptional regulator AnsR [Bacillus cereus G9842], gi\|21854085... gi\|218232005, gi... - gi\|218232005\|ref\|YP_002367824.1\| transcriptional regulator AnsR [Bacillus cereus B4264], gi\|21815996... gi\|30021207, gi\|... - gi\|30021207\|ref\|NP_832838.1\| ans operon repressor protein [Bacillus cereus ATCC 14579], gi\|29896761\|... gi\|228969571, gi... - gi\|228969571\|ref\|ZP_04130373.1\| HTH-type transcriptional regulator ansR [Bacillus thuringiensis sero... gi\|228632148, gi... - gi\|229151303\|ref\|ZP_04279508.1\| HTH-type transcriptional regulator ansR [Bacillus cereus m1550], gi\|...	5.0E-21	[1..125]	[1..125]
gi\|118417655, gi... - gi\|118478430\|ref\|YP_895581.1\| ans operon repressor protein [Bacillus thuringiensis str. Al Hakam], g... gi\|65320391 - gi\|65320391\|ref\|ZP_00393350.1\| COG1396: Predicted transcriptional regulators [Bacillus anthracis str...	6.0E-21	[1..125]	[4..128]
gi\|47564254, gi\|... - gi\|47564254\|ref\|ZP_00235299.1\| transcriptional regulator, Cro/CI family [Bacillus cereus G9241], gi\|...	2.0E-20	[1..124]	[1..124]
gi\|19745754, gi\|... - gi\|19747895\|gb\|AAL97389.1\| putative repressor protein [Streptococcus pyogenes MGAS8232], gi\|19745754... gi\|139474145, gi... - gi\|139474145\|ref\|YP_001128861.1\| putative phage repressor protein [Streptococcus pyogenes str. Manfr...	3.0E-20	[1..122]	[10..129]
gi\|48835840 - ref\|ZP_00292838.1\| COG3800: Predicted transcriptional regulator [Thermobifida fusca] gi\|72161782, gi\|... - gi\|72161782\|ref\|YP_289439.1\| helix-hairpin-helix DNA-binding motif-containing protein [Thermobifida ...	1.0E-17	[2..114]	[14..131]
gi\|25519852 - pir\|\|D97388 probable DNA-binding protein (AL138598) [imported] - Agrobacterium tumefaciens (strain C... gi\|15887595, gi\|... - gi\|15887595\|ref\|NP_353276.1\| hypothetical protein AGR_C_418 [Agrobacterium tumefaciens str. C58], gi...	2.0E-17	[1..114]	[24..135]
gi\|134053324, gi... - gi\|88945831\|ref\|ZP_01148994.1\| Helix-turn-helix motif [Desulfotomaculum reducens MI-1], gi\|88924565\|...	2.0E-17	[1..114]	[27..139]
gi\|86355908, gi\|... - gi\|86355908\|ref\|YP_467800.1\| LacI family transcription regulator [Rhizobium etli CFN 42], gi\|8628001...	3.0E-17	[1..90]	[9..98]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLERLSELRK NQKWSLQETA DRLGIAKSTY AGYENGYRLP SLQSLSKIAD LFDTSVDYIL  60
   61 GRIEHSHQNK DVIDITRLLN DPDPTLLIDG EALSTEEIID FIAFVRSKRE LSSKRIENIE 120
  121 PTCKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.0
Match:	1b0nA
Description:	SinR repressor dimerisation domain; SinR repressor, DNA-binding domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
DNA binding	3.85002031997592	bayes_pls_golite062009
nucleic acid binding	3.75841546996198	bayes_pls_golite062009
transcription regulator activity	3.48897156115814	bayes_pls_golite062009
transcription factor activity	2.36423264873787	bayes_pls_golite062009
binding	2.32539337034365	bayes_pls_golite062009
catalytic activity	0.374904657353081	bayes_pls_golite062009
RNA polymerase II transcription factor activity	0.29966985317584	bayes_pls_golite062009
sequence-specific DNA binding	0.20324889750334	bayes_pls_golite062009
transcription repressor activity	0.0485771867742395	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: