YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|47501563, gi\|...
Organism:	Bacillus anthracis str. 'Ames Ancestor'
Length:	64 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|47501563, gi|....

Description	E-value	Query Range	Subject Range
gi\|52144184, gi\|... - gi\|52144184\|ref\|YP_082644.1\| spore germination protein PD [Bacillus cereus E33L], gi\|51977653\|gb\|AAU...	106.0	[0..1]	[64..1]
gi\|228628761, gi... - gi\|229154813\|ref\|ZP_04282928.1\| spore germination protein gerPD [Bacillus cereus ATCC 4342], gi\|2286... gi\|47555800, gi\|... - gi\|47567605\|ref\|ZP_00238316.1\| spore germination protein PD-related protein [Bacillus cereus G9241],... gi\|42780323, gi\|... - gi\|42780323\|ref\|NP_977570.1\| spore germination protein GerPD [Bacillus cereus ATCC 10987], gi\|427362...	106.0	[0..1]	[64..1]
GERPD_BACCE - Probable spore germination protein GerPD OS=Bacillus cereus GN=gerPD PE=1 SV=1 gi\|206967590, gi... - gi\|206967590\|ref\|ZP_03228546.1\| spore germination protein GerPD [Bacillus cereus AH1134], gi\|2067365... gi\|218163616, gi... - gi\|218235659\|ref\|YP_002365930.1\| spore germination protein GerPD [Bacillus cereus B4264], gi\|2181636... gi\|218542478, gi... - gi\|218896181\|ref\|YP_002444592.1\| spore germination protein GerPD [Bacillus cereus G9842], gi\|2185424... GERPD_BACCR - Probable spore germination protein GerPD OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 /... gi\|74492335, gi\|... - gi\|75760171\|ref\|ZP_00740229.1\| Spore germination protein PD [Bacillus thuringiensis serovar israelen... gi\|228899823, gi... - gi\|228899823\|ref\|ZP_04064069.1\| spore germination protein gerPD [Bacillus thuringiensis IBL 4222], g... gi\|229189335, gi... - gi\|229189335\|ref\|ZP_04316355.1\| spore germination protein gerPD [Bacillus cereus ATCC 10876], gi\|228...	105.0	[0..1]	[64..1]
gi\|89205679, gi\|... - gi\|89205679\|ref\|ZP_01184247.1\| spore germination protein PD [Bacillus weihenstephanensis KBAB4], gi\|...	102.0	[0..1]	[64..1]
gi\|89150264, gi\|... - gi\|89201752\|ref\|ZP_01180488.1\| spore germination protein PD [Bacillus cereus subsp. cytotoxis NVH 39...	99.0	[0..1]	[64..1]
GERPD_BACSU - Probable spore germination protein GerPD OS=Bacillus subtilis (strain 168) GN=gerPD PE=1 SV=1 gi\|221318154 - gi\|221318154\|ref\|ZP_03599448.1\| spore germination protein [Bacillus subtilis subsp. subtilis str. JH... gi\|221322429 - gi\|221322429\|ref\|ZP_03603723.1\| spore germination protein [Bacillus subtilis subsp. subtilis str. SM... GERPD_BACSU, GEP... - Probable spore germination protein gerPD OS=Bacillus subtilis GN=gerPD PE=1 SV=1, (O06718) Probable ... gi\|221313231 - gi\|221313231\|ref\|ZP_03595036.1\| spore germination protein [Bacillus subtilis subsp. subtilis str. NC...	92.0	[0..1]	[58..1]
gi\|52347436, gi\|... - gi\|52784934\|ref\|YP_090763.1\| GerPD [Bacillus licheniformis ATCC 14580], gi\|52347436\|gb\|AAU40070.1\| G...	74.0	[0..1]	[58..1]
gi\|56419222, gi\|... - gi\|56419222\|ref\|YP_146540.1\| spore germination protein [Geobacillus kaustophilus HTA426], gi\|5637906...	73.0	[0..5]	[63..1]
gi\|89098022, gi\|... - gi\|89098022\|ref\|ZP_01170908.1\| hypothetical protein B14911_20878 [Bacillus sp. NRRL B-14911], gi\|890...	69.0	[0..1]	[58..1]

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Predicted Domain #1

Region A:
Residues: [1-64]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLNVVNREF KVGQIKMNGV SSSALFLIGD ANFLILSSIL DTPFETVTEG PFVPLVTDVP  60
   61 PTPG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits