YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49181977, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49181977, gi|....

Description	E-value	Query Range	Subject Range
PTJB_BACSU, PTCB... - Lichenan-specific phosphotransferase enzyme IIB component OS=Bacillus subtilis GN=licB PE=1 SV=1, (P... PTJB_BACSU - Lichenan-specific phosphotransferase enzyme IIB component OS=Bacillus subtilis (strain 168) GN=licB ... gi\|221321063 - gi\|221321063\|ref\|ZP_03602357.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone... gi\|221325348 - gi\|221325348\|ref\|ZP_03606642.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone... gi\|221316152 - gi\|221316152\|ref\|ZP_03597957.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone...	9.0E-34	[1..98]	[1..98]
gi\|47553317, gi\|... - gi\|47570018\|ref\|ZP_00240680.1\| PTS system, IIB component [Bacillus cereus G9241], gi\|47569712\|ref\|ZP...	2.0E-33	[1..100]	[1..100]
gi\|228652801, gi... - gi\|229130462\|ref\|ZP_04259418.1\| PTS system, IIB component [Bacillus cereus BDRD-Cer4], gi\|228652801\|... gi\|229050877, gi... - gi\|229050877\|ref\|ZP_04194429.1\| PTS system, IIB component [Bacillus cereus AH676], gi\|228722533\|gb\|E... gi\|228798224, gi... - gi\|228961454\|ref\|ZP_04123066.1\| PTS system, IIB component [Bacillus thuringiensis serovar pakistani ... gi\|29898809, gi\|... - gi\|30023249\|ref\|NP_834880.1\| PTS system, lichenan oligosaccharide-specific IIB component [Bacillus c...	3.0E-33	[1..100]	[1..100]
gi\|222098672, gi... - gi\|222098672\|ref\|YP_002532730.1\| PTS system, cellobiose-specific IIB component [Bacillus cereus Q1],... gi\|75759428, gi\|... - gi\|75759428\|ref\|ZP_00739522.1\| PTS system, lichenan oligosaccharide-specific IIB component [Bacillus... gi\|217962699, gi... - gi\|217962699\|ref\|YP_002341273.1\| PTS system, cellobiose-specific IIB component [Bacillus cereus AH18... gi\|218544811, gi... - gi\|218900334\|ref\|YP_002448745.1\| PTS system, cellobiose-specific IIB component [Bacillus cereus G984... gi\|225867181, gi... - gi\|225867181\|ref\|YP_002752559.1\| PTS system, cellobiose-specific IIB component [Bacillus cereus 03BB... gi\|196045715, gi... - gi\|196045715\|ref\|ZP_03112945.1\| PTS system, cellobiose-specific IIB component [Bacillus cereus 03BB1... gi\|206744924, gi... - gi\|206976789\|ref\|ZP_03237692.1\| PTS system, cellobiose-specific IIB component [Bacillus cereus H3081...	4.0E-33	[1..100]	[1..100]
gi\|52140350, gi\|... - gi\|52140350\|ref\|YP_086479.1\| PTS system, cellobiose-specific IIB subunit [Bacillus cereus E33L], gi\|...	5.0E-33	[1..100]	[1..100]
PTEB_GEOSE - Cellobiose-specific phosphotransferase enzyme IIB component OS=Geobacillus stearothermophilus GN=cel...	8.0E-33	[1..99]	[1..99]
gi\|42740303, gi\|... - gi\|42784371\|ref\|NP_981618.1\| PTS system, cellobiose-specific IIB component [Bacillus cereus ATCC 109...	1.0E-32	[1..100]	[1..100]
gi\|52787766, gi\|... - gi\|52787766\|ref\|YP_093595.1\| LicB [Bacillus licheniformis ATCC 14580], gi\|52350268\|gb\|AAU42902.1\| Li...	2.0E-32	[1..98]	[1..98]
gi\|89086742, gi\|... - gi\|89098497\|ref\|ZP_01171380.1\| PTS system, cellobiose-specific IIB component [Bacillus sp. NRRL B-14...	2.0E-32	[1..98]	[20..117]
gi\|89150746, gi\|... - gi\|89201159\|ref\|ZP_01179905.1\| Phosphotransferase system, lactose/cellobiose-specific IIB subunit [B...	3.0E-32	[1..99]	[1..99]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNILLCCAAG MSSSLIVTKM EKAAEARGIE VKIWAVSGSE VNSHIDEADV LLLGPQVRYL  60
   61 LPKMKELCKG KGVPVDVIQS VHYGLCNGEA ILQAALSMKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.30103
Match:	1h9cA
Description:	Enzyme IIB-cellobiose
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	5.08041453921791	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	4.49138214292642	bayes_pls_golite062009
glucoside transmembrane transporter activity	1.83892097143526	bayes_pls_golite062009
sugar transmembrane transporter activity	1.77053981674308	bayes_pls_golite062009
transporter activity	1.6837050020547	bayes_pls_golite062009
transmembrane transporter activity	1.5685227361887	bayes_pls_golite062009
substrate-specific transporter activity	1.32293422112884	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.217268678967	bayes_pls_golite062009
active transmembrane transporter activity	1.12964417923438	bayes_pls_golite062009
monosaccharide transmembrane transporter activity	0.71593290802554	bayes_pls_golite062009
catalytic activity	0.676259875978821	bayes_pls_golite062009
beta-glucoside transmembrane transporter activity	0.50967675887857	bayes_pls_golite062009
binding	0.472595683811139	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.37663629577414	bayes_pls_golite062009
fructose transmembrane transporter activity	0.225562559709031	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.0296784994545702	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: