YRC Public Data Repository - Protein Structure Prediction

Protein:	TATB_PECAS
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TATB_PECAS.

Description	E-value	Query Range	Subject Range
IGA4_HAEIF - Immunoglobulin A1 protease autotransporter OS=Haemophilus influenzae GN=iga PE=3 SV=1	92.0	[0..27]	[194..1146]
TATB_BURCH - Sec-independent protein translocase protein TatB OS=Burkholderia cenocepacia (strain HI2424) GN=tatB... TATB_BURCA - Sec-independent protein translocase protein TatB OS=Burkholderia cenocepacia (strain AU 1054) GN=tat... gi\|124871292, gi... - gi\|254246516\|ref\|ZP_04939837.1\| Twin-arginine translocation protein TatB [Burkholderia cenocepacia P... gi\|169815013, gi... - gi\|170731771\|ref\|YP_001763718.1\| sec-independent translocase [Burkholderia cenocepacia MC0-3], gi\|16...	90.0	[0..1]	[142..1]
gi\|76591416, gi\|... - gi\|76793314\|ref\|ZP_00775803.1\| Twin-arginine translocation protein TatB [Pseudoalteromonas atlantica...	89.0	[0..1]	[99..1]
gi\|46911761, gi\|... - gi\|54307341\|ref\|YP_128361.1\| sec-independent translocase [Photobacterium profundum SS9], gi\|46911761...	89.0	[0..1]	[111..1]
TATB_BORPE - Sec-independent protein translocase protein TatB OS=Bordetella pertussis GN=tatB PE=3 SV=1 TATB_BORPE - Sec-independent protein translocase protein TatB OS=Bordetella pertussis (strain Tohama I / ATCC BAA...	87.0	[0..1]	[107..1]
TATB_HAES1 - Sec-independent protein translocase protein TatB OS=Haemophilus somnus (strain 129Pt) GN=tatB PE=3 S...	87.0	[0..1]	[130..1]
gi\|41351845 - gi\|41351845\|gb\|AAS00635.1\| adhesin; P97 [Mycoplasma hyopneumoniae]	87.0	[0..30]	[188..744]
TATB_VIBVU - Sec-independent protein translocase protein TatB OS=Vibrio vulnificus GN=tatB PE=3 SV=1 TATB_VIBVU - Sec-independent protein translocase protein TatB OS=Vibrio vulnificus (strain CMCP6) GN=tatB PE=3 SV... TATB_VIBVY - Sec-independent protein translocase protein TatB OS=Vibrio vulnificus (strain YJ016) GN=tatB PE=3 SV...	85.0	[0..1]	[130..1]
TATB_BORA1 - Sec-independent protein translocase protein TatB OS=Bordetella avium (strain 197N) GN=tatB PE=3 SV=1	85.0	[0..1]	[128..1]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDIGFGELL LVMVLGLIVL GPERLPVAVR TVASWIRTLR SLASTVQNEL SQELKLQEFQ  60
   61 ESLKKVEKAS LQNLSPELKA SMDELKDAAE AMKRGYTETP SPQKSDDPKK SGDHSATVEP 120
  121 QSNIPLNDPE AAYDGVIEAE TAVRPADSQQ KPENAAVAEN HNDGRHATSD EAVGNNNVKP 180
  181 EQSQPSAASA RQPSDSR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.05
Match:	1q1qA
Description:	Crystal structure of human pregnenolone sulfotransferase (SULT2B1a) in the presence of PAP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits