YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50119229, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50119229, gi|....

Description	E-value	Query Range	Subject Range
gi\|84363249 - gi\|84363249\|ref\|ZP_00987845.1\| COG1792: Cell shape-determining protein [Burkholderia dolosa AUO158]	179.0	[0..1]	[158..368]
gi\|77973455 - gi\|77973455\|ref\|ZP_00829003.1\| COG2891: Cell shape-determining protein [Yersinia frederiksenii ATCC ...	166.0	[0..1]	[162..1]
gi\|37527916, gi\|... - gi\|37527916\|ref\|NP_931261.1\| rod shape-determining protein MreD [Photorhabdus luminescens subsp. lau...	165.0	[0..1]	[161..1]
gi\|229705758, gi... - gi\|229836815\|ref\|ZP_04456980.1\| cell wall structural complex MreBCD transmembrane component MreD [Ye... Q665F5\|Q665F5_YERPS - Rod shape-determining protein MreD - Yersinia pseudotuberculosis gi\|229695652, gi... - gi\|229839286\|ref\|ZP_04459445.1\| cell wall structural complex MreBCD transmembrane component MreD [Ye... gi\|149289031, gi... - gi\|153997394\|ref\|ZP_02022494.1\| rod shape-determining protein MreD [Yersinia pestis CA88-4125], gi\|1... gi\|229687341, gi... - gi\|229899849\|ref\|ZP_04514990.1\| cell wall structural complex MreBCD transmembrane component MreD [Ye... gi\|145209286, gi... - gi\|145597590\|ref\|YP_001161666.1\| rod shape-determining protein MreD [Yersinia pestis Pestoides F], g... gi\|166214159, gi... - gi\|166214159\|ref\|ZP_02240194.1\| rod shape-determining protein MreD [Yersinia pestis biovar Antiqua s... gi\|165989697, gi... - gi\|166011313\|ref\|ZP_02232211.1\| rod shape-determining protein MreD [Yersinia pestis biovar Antiqua s... gi\|25355497 - pir\|\|AE0446 rod shape-determining protein MreD [imported] - Yersinia pestis (strain CO92) gi\|166961366, gi... - gi\|167420560\|ref\|ZP_02312313.1\| rod shape-determining protein MreD [Yersinia pestis biovar Orientali... gi\|167402023, gi... - gi\|167402023\|ref\|ZP_02307506.1\| rod shape-determining protein MreD [Yersinia pestis biovar Antiqua s... gi\|45438478, gi\|... - gi\|45443608\|ref\|NP_995147.1\| rod shape-determining protein MreD [Yersinia pestis biovar Microtus str... gi\|167466829 - gi\|167466829\|ref\|ZP_02331533.1\| rod shape-determining protein MreD [Yersinia pestis FV-1] gi\|22124119, gi\|... - gi\|22124119\|ref\|NP_667542.1\| rod shape-determining protein MreD [Yersinia pestis KIM], gi\|21956872\|g... gi\|167055603, gi... - gi\|167425589\|ref\|ZP_02317342.1\| rod shape-determining protein MreD [Yersinia pestis biovar Mediaeval... gi\|115349289, gi... - gi\|218930678\|ref\|YP_002348553.1\| rod shape-determining protein MreD [Yersinia pestis CO92], gi\|16123... gi\|186700074, gi... - gi\|186897048\|ref\|YP_001874160.1\| rod shape-determining protein MreD [Yersinia pseudotuberculosis PB1... gi\|51597854, gi\|... - gi\|51597854\|ref\|YP_072045.1\| rod shape-determining protein MreD [Yersinia pseudotuberculosis IP 3295... gi\|170022718, gi... - gi\|170022718\|ref\|YP_001719223.1\| rod shape-determining protein MreD [Yersinia pseudotuberculosis YPI... gi\|165914620, gi... - gi\|89105387\|ref\|ZP_01177907.1\| COG2891: Cell shape-determining protein [Yersinia pestis biovar Orien... gi\|165927597, gi... - gi\|165927597\|ref\|ZP_02223429.1\| rod shape-determining protein MreD [Yersinia pestis biovar Orientali... gi\|108809671, gi... - gi\|108809671\|ref\|YP_653587.1\| rod shape-determining protein MreD [Yersinia pestis Antiqua], gi\|10878... gi\|229678278, gi... - gi\|229904160\|ref\|ZP_04519271.1\| cell wall structural complex MreBCD transmembrane component MreD [Ye... gi\|162351443, gi... - gi\|77634298\|ref\|ZP_00796401.1\| COG2891: Cell shape-determining protein [Yersinia pestis Angola], gi\|... gi\|77630564, gi\|... - gi\|77630564\|ref\|ZP_00793150.1\| COG2891: Cell shape-determining protein [Yersinia pseudotuberculosis ...	165.0	[0..1]	[162..1]
gi\|77958849 - gi\|77958849\|ref\|ZP_00822876.1\| COG2891: Cell shape-determining protein [Yersinia bercovieri ATCC 439...	165.0	[0..1]	[162..1]
gi\|77978747 - gi\|77978747\|ref\|ZP_00834172.1\| COG2891: Cell shape-determining protein [Yersinia intermedia ATCC 299...	165.0	[0..1]	[162..1]
gi\|85058136, gi\|... - gi\|85058136\|ref\|YP_453838.1\| rod shape-determining protein MreD [Sodalis glossinidius str. 'morsitan...	156.0	[0..1]	[162..1]
gi\|200387873, gi... - gi\|200387873\|ref\|ZP_03214485.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enter... gi\|198245977, gi... - gi\|198245977\|ref\|YP_002217341.1\| rod shape-determining protein MreD [Salmonella enterica subsp. ente... gi\|197095706, gi... - gi\|197364229\|ref\|YP_002143866.1\| rod shape-determining protein MreD [Salmonella enterica subsp. ente... gi\|197243139, gi... - gi\|197264884\|ref\|ZP_03164958.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enter... gi\|213028133 - gi\|213028133\|ref\|ZP_03342580.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enter... gi\|207858620, gi... - gi\|207858620\|ref\|YP_002245271.1\| rod shape-determining protein MreD [Salmonella enterica subsp. ente... gi\|205274054, gi... - gi\|205354273\|ref\|YP_002228074.1\| rod shape-determining protein MreD [Salmonella enterica subsp. ente... gi\|204319954, gi... - gi\|204931187\|ref\|ZP_03221981.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enter... gi\|195633161, gi... - gi\|195633161\|gb\|EDX51575.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enterica ... gi\|205336192, gi... - gi\|205336192\|gb\|EDZ22956.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enterica ... gi\|197287898, gi... - gi\|197287898\|gb\|EDY27286.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enterica ... gi\|168233955, gi... - gi\|205332043\|gb\|EDZ18807.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enterica ... gi\|194737883, gi... - gi\|194737883\|ref\|YP_002116320.1\| rod shape-determining protein MreD [Salmonella enterica subsp. ente... gi\|194472772, gi... - gi\|194472772\|ref\|ZP_03078756.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enter... gi\|194448297, gi... - gi\|194448297\|ref\|YP_002047400.1\| rod shape-determining protein MreD [Salmonella enterica subsp. ente... gi\|194445836, gi... - gi\|194445836\|ref\|YP_002042627.1\| rod shape-determining protein MreD [Salmonella enterica subsp. ente... gi\|16421932, gi\|... - gi\|16766667\|ref\|NP_462282.1\| rod shape-determining protein MreD [Salmonella typhimurium LT2], gi\|164... gi\|213647006 - gi\|213647006\|ref\|ZP_03377059.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enter... gi\|29139255, gi\|... - gi\|29143620\|ref\|NP_806962.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enterica... gi\|56129556, gi\|... - gi\|56415299\|ref\|YP_152374.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enterica... gi\|213582027 - gi\|213582027\|ref\|ZP_03363853.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enter... gi\|213428312 - gi\|213428312\|ref\|ZP_03361062.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enter... gi\|25355498, gi\|... - gi\|25355498\|pir\|\|AI0911 rod shape-determining protein [imported] - Salmonella enterica subsp. enteri... gi\|213051959 - gi\|213051959\|ref\|ZP_03344837.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enter... gi\|16762131 - gi\|16762131\|ref\|NP_457748.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enterica... gi\|214002741 - gi\|214002741\|ref\|ZP_03413476.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enter... gi\|213859944 - gi\|213859944\|ref\|ZP_03385648.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enter... gi\|167993956, gi... - gi\|205328087\|gb\|EDZ14851.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enterica ... gi\|205322521, gi... - gi\|205322521\|gb\|EDZ10360.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enterica ... gi\|161616391, gi... - gi\|161616391\|ref\|YP_001590356.1\| rod shape-determining protein MreD [Salmonella enterica subsp. ente... lcl\|NC_016856.1_... - [gene=mreD] [protein=rod shape-determining protein MreD] [protein_id=YP_005239558.1] [location=compl...	154.0	[0..2]	[162..3]
gi\|82545522, gi\|... - gi\|82545522\|ref\|YP_409469.1\| rod shape-determining protein MreD [Shigella boydii Sb227], gi\|81246933...	154.0	[0..1]	[162..1]
gi\|62181880, gi\|... - gi\|62181880\|ref\|YP_218297.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enterica...	154.0	[0..2]	[162..3]

Back

Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRYRRHGNW IIWLSFLIAM VLQIMPWPDE IYMFRPSWLT LFLIYWVMAL PHRVNVGTGF  60
   61 VLGLIMDLIL GSTLGVRALA LSIVAYLVAF KFQLFRNMAL WQQALIVMLL SLLMDLTVFW 120
  121 AEFLVINVSF RPETFWNSVV DGVLWPWLFL LMRKIRRQFT VQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	56.60206
Match:	PF04093.3
Description:	No description for PF04093.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits