YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50119276, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50119276, gi|....

Description	E-value	Query Range	Subject Range
gi\|84317886 - gi\|84317886\|ref\|ZP_00966321.1\| COG3155: Uncharacterized protein involved in an early stage of isopre... gi\|107104347 - gi\|107104347\|ref\|ZP_01368265.1\| hypothetical protein PaerPA_01005422 [Pseudomonas aeruginosa PACS2] gi\|53726706 - gi\|53726706\|ref\|ZP_00347670.1\| COG3155: Uncharacterized protein involved in an early stage of isopre...	193.0	[0..2]	[217..41]
gi\|77973383 - gi\|77973383\|ref\|ZP_00828931.1\| COG3155: Uncharacterized protein involved in an early stage of isopre...	192.0	[0..1]	[217..1]
gi\|84324051 - gi\|84324051\|ref\|ZP_00972116.1\| COG3155: Uncharacterized protein involved in an early stage of isopre...	192.0	[0..2]	[217..41]
gi\|16421885, gi\|... - gi\|16766622\|ref\|NP_462237.1\| isoprenoid biosynthesis protein [Salmonella typhimurium LT2], gi\|164218... gi\|205354228, gi... - gi\|205354228\|ref\|YP_002228029.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [... gi\|207858575, gi... - gi\|207858575\|ref\|YP_002245226.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [... gi\|205343515, gi... - gi\|205343515\|gb\|EDZ30279.1\| enhancing lycopene biosynthesis protein 2 [Salmonella enterica subsp. en... lcl\|NC_016856.1_... - [gene=yhbL] [protein=isoprenoid biosynthesis protein] [protein_id=YP_005239507.1] [location=compleme... gi\|199603809, gi... - gi\|200386711\|ref\|ZP_03213323.1\| enhancing lycopene biosynthesis protein 2 [Salmonella enterica subsp... gi\|161365701, gi... - gi\|161616337\|ref\|YP_001590302.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [... gi\|205327629, gi... - gi\|205327629\|gb\|EDZ14393.1\| enhancing lycopene biosynthesis protein 2 [Salmonella enterica subsp. en...	192.0	[0..1]	[217..1]
gi\|62129468, gi\|... - gi\|62181835\|ref\|YP_218252.1\| isoprenoid biosynthesis protein [Salmonella enterica subsp. enterica se...	190.0	[0..1]	[217..1]
gi\|29139213, gi\|... - gi\|29143578\|ref\|NP_806920.1\| isoprenoid biosynthesis protein [Salmonella enterica subsp. enterica se... gi\|16762089 - gi\|16762089\|ref\|NP_457706.1\| isoprenoid biosynthesis protein [Salmonella enterica subsp. enterica se... gi\|16504392, gi\|... - gi\|25325808\|pir\|\|AF0906 conserved hypothetical protein STY3506 [imported] - Salmonella enterica subs... gi\|56415256, gi\|... - gi\|56415256\|ref\|YP_152331.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [Salm... gi\|197364186, gi... - gi\|197364186\|ref\|YP_002143823.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [... gi\|213426629 - gi\|213426629\|ref\|ZP_03359379.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [S...	190.0	[0..1]	[217..1]
gi\|77977062, gi\|... - gi\|77977062\|ref\|ZP_00832522.1\| COG3155: Uncharacterized protein involved in an early stage of isopre...	190.0	[0..1]	[217..1]
gi\|227835326, gi... - gi\|227887930\|ref\|ZP_04005735.1\| isoprenoid biosynthesis protein [Escherichia coli 83972], gi\|2278353... gi\|26249795, gi\|... - gi\|26249795\|ref\|NP_755835.1\| isoprenoid biosynthesis protein [Escherichia coli CFT073], gi\|26110223\|... gi\|191174422, gi... - gi\|75236488\|ref\|ZP_00720583.1\| COG3155: Uncharacterized protein involved in an early stage of isopre... gi\|110643450, gi... - gi\|110643450\|ref\|YP_671180.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [Esc...	189.0	[0..1]	[217..1]
gi\|218701978, gi... - gi\|218701978\|ref\|YP_002409607.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [... gi\|217326892, gi... - gi\|217326892\|ref\|ZP_03442975.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7 ... gi\|209398524, gi... - gi\|209398524\|ref\|YP_002272679.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7... gi\|208741366, gi... - gi\|208821243\|ref\|ZP_03261563.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7 ... gi\|208811932, gi... - gi\|208811932\|ref\|ZP_03253261.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7 ... gi\|208729483, gi... - gi\|208809682\|ref\|ZP_03252019.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7 ... gi\|195940065 - gi\|195940065\|ref\|ZP_03085447.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [E... gi\|168800923, gi... - gi\|189376857\|gb\|EDU95273.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7 str.... gi\|189374165, gi... - gi\|189374165\|gb\|EDU92581.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7 str.... gi\|38704149 - gi\|38704149\|ref\|NP_312115.2\| isoprenoid biosynthesis protein with amidotransferase-like domain [Esch... gi\|189001114, gi... - gi\|189001114\|gb\|EDU70100.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7 str.... gi\|187767461, gi... - gi\|187767461\|gb\|EDU31305.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7 str.... gi\|189361850, gi... - gi\|189361850\|gb\|EDU80269.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7 str.... gi\|189366141, gi... - gi\|189366141\|gb\|EDU84557.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7 str.... gi\|254795158, gi... - gi\|254795158\|ref\|YP_003079995.1\| isoprenoid biosynthesis protein with amidotransferase-like domain [... gi\|189358772, gi... - gi\|189358772\|gb\|EDU77191.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7 str.... gi\|188014364, gi... - gi\|188014364\|gb\|EDU52486.1\| enhancing lycopene biosynthesis protein 2 [Escherichia coli O157:H7 str.... gi\|38704149 - gi\|38704149\|ref\|NP_312115.2\| sigma cross-reacting protein 27A [Escherichia coli O157:H7]	189.0	[0..1]	[217..1]
gi\|7449877, gi\|6... - gi\|7449877\|pir\|\|C65112 sigma cross-reacting protein 27A - Escherichia coli (strain K-12), gi\|606148\|... gi\|24114497, gi\|... - ref\|NP_709007.1\| sigma cross-reacting protein 27A (SCRP-27A) [Shigella flexneri 2a str. 301], gb\|AA... gi\|254038374, gi... - gi\|254038374\|ref\|ZP_04872432.1\| sigma cross-reacting protein 27A [Escherichia sp. 1_1_43], gi\|226839... gi\|16131099, gi\|... - gb\|AAC76241.1\| sigma cross-reacting protein 27A (SCRP-27A) [Escherichia coli K12], gi\|16131099\|ref\|... gi\|606148\|gb\|AAA... - sigma cross-reacting protein 27A [Escherichia coli]	189.0	[0..1]	[217..4]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRVGIVLSG CGVYDGSEIH EAVLTLLALD RAGAQAVCFA PDKPQLQVVN HLTGDVTGEN  60
   61 RNVLAESARI VRGKIQPLST ANAQDLDALI VPGGFGAAKN LSDFSTQGSA CQIDETLQLL 120
  121 TQEIYKQNKP IGFICISPAL LPTILGIPVR VTIGNDIDTA EAVEEMGGIH VVCPVDDIVV 180
  181 DEEHKIVTTP AYMLASSISE AAQGIDKLVA RVLALTE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.69897
Match:	1vhqA
Description:	Crystal structure of enhancing lycopene biosynthesis protein 2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.30391542469987	bayes_pls_golite062009
protein binding	1.06565672438103	bayes_pls_golite062009
ligase activity	0.606811845310629	bayes_pls_golite062009
nucleic acid binding	0.59602498623822	bayes_pls_golite062009
binding	0.588714599255874	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: