YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50120110, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50120110, gi|....

Description	E-value	Query Range	Subject Range
gi\|36787146, gi\|... - gi\|37527710\|ref\|NP_931055.1\| DNA-binding transcriptional repressor AcrR [Photorhabdus luminescens su...	142.0	[0..1]	[209..1]
ACRR_ECOLI - HTH-type transcriptional regulator acrR (Potential acrAB operon repressor) - Escherichia coli gi\|192929208, gi... - gi\|75257891\|ref\|ZP_00729369.1\| COG1309: Transcriptional regulator [Escherichia coli E22], gi\|1930641... gi\|188490228, gi... - gi\|75514587\|ref\|ZP_00736842.1\| COG1309: Transcriptional regulator [Escherichia coli 53638], gi\|18849... gi\|191173707, gi... - gi\|75238216\|ref\|ZP_00722217.1\| COG1309: Transcriptional regulator [Escherichia coli F11], gi\|1911737... gi\|75239040, gi\|... - gi\|75239040\|ref\|ZP_00723022.1\| COG1309: Transcriptional regulator [Escherichia coli E110019], gi\|193... gi\|81244368, gi\|... - gi\|82542957\|ref\|YP_406904.1\| DNA-binding transcriptional repressor AcrR [Shigella boydii Sb227], gi\|... gi\|85674603, gi\|... - gi\|89107333\|ref\|AP_001113.1\| DNA-binding transcriptional regulator [Escherichia coli str. K-12 subst... gi\|73854520, gi\|... - gi\|74311043\|ref\|YP_309462.1\| DNA-binding transcriptional repressor AcrR [Shigella sonnei Ss046], gi\|... gi\|82775805, gi\|... - gi\|82775805\|ref\|YP_402152.1\| DNA-binding transcriptional repressor AcrR [Shigella dysenteriae Sd197]... gi\|83587081, gi\|... - gi\|83587081\|ref\|ZP_00925711.1\| COG1309: Transcriptional regulator [Escherichia coli 101-1], gi\|19443... gi\|75177592, gi\|... - gi\|75177592\|ref\|ZP_00697673.1\| COG1309: Transcriptional regulator [Shigella boydii BS512], gi\|187733... gi\|194418945, gi... - gi\|83570207\|ref\|ZP_00921653.1\| COG1309: Transcriptional regulator [Shigella dysenteriae 1012], gi\|19... gi\|194412933, gi... - gi\|75209780\|ref\|ZP_00709982.1\| COG1309: Transcriptional regulator [Escherichia coli B171], gi\|194428... gi\|75229375, gi\|... - gi\|75229375\|ref\|ZP_00715930.1\| COG1309: Transcriptional regulator [Escherichia coli B7A], gi\|1911674... gi\|157078935, gi... - gi\|75189532\|ref\|ZP_00702799.1\| COG1309: Transcriptional regulator [Escherichia coli E24377A], gi\|157... gi\|75194684, gi\|... - gi\|75194684\|ref\|ZP_00704754.1\| COG1309: Transcriptional regulator [Escherichia coli HS], gi\|15715999... ACRR_SHIFL - HTH-type transcriptional regulator AcrR OS=Shigella flexneri GN=acrR PE=3 SV=1 gi\|24050642, gi\|... - gi\|24111847\|ref\|NP_706357.1\| DNA-binding transcriptional repressor AcrR [Shigella flexneri 2a str. 3... EG12116 - transcriptional repressor / Transcriptional repressor for acrAB ACRR_ECOL6 - HTH-type transcriptional regulator AcrR OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPE... gi\|30040208, gi\|... - gi\|30061964\|ref\|NP_836135.1\| DNA-binding transcriptional repressor AcrR [Shigella flexneri 2a str. 2... EG12116 - transcriptional repressor / Transcriptional repressor for acrAB gi\|218698624, gi... - gi\|218698624\|ref\|YP_002406253.1\| DNA-binding transcriptional repressor AcrR [Escherichia coli IAI39]... gi\|168747860, gi... - gi\|188017580\|gb\|EDU55702.1\| transcriptional regulator AcrR [Escherichia coli O157:H7 str. EC4113], g... gi\|168768419, gi... - gi\|189362463\|gb\|EDU80882.1\| transcriptional regulator AcrR [Escherichia coli O157:H7 str. EC4486], g... gi\|168754569, gi... - gi\|189357966\|gb\|EDU76385.1\| transcriptional regulator AcrR [Escherichia coli O157:H7 str. EC4401], g... gi\|227838610, gi... - gi\|227884524\|ref\|ZP_04002329.1\| DNA-binding transcriptional repressor [Escherichia coli 83972], gi\|2... gi\|226898750, gi... - gi\|237707540\|ref\|ZP_04538021.1\| acrAB operon repressor [Escherichia sp. 3_2_53FAA], gi\|226898750\|gb\|... gi\|238860972, gi... - gi\|238899751\|ref\|YP_002925547.1\| DNA-binding transcriptional repressor [Escherichia coli BW2952], gi... gi\|251783973, gi... - gi\|251783973\|ref\|YP_002998277.1\| hypothetical protein B21_00420 [Escherichia coli BL21], gi\|24237624... ACRR_ECOL6 - HTH-type transcriptional regulator AcrR OS=Escherichia coli O6 GN=acrR PE=3 SV=1 gi\|110804491, gi... - gi\|110804491\|ref\|YP_688011.1\| DNA-binding transcriptional repressor AcrR [Shigella flexneri 5 str. 8... gi\|208822989, gi... - gi\|208822989\|ref\|ZP_03263307.1\| transcriptional regulator AcrR [Escherichia coli O157:H7 str. EC4042... gi\|253774546, gi... - gi\|254287337\|ref\|YP_003053085.1\| DNA-binding transcriptional repressor [Escherichia coli BL21(DE3)],... gi\|208816218, gi... - gi\|208816218\|ref\|ZP_03257397.1\| transcriptional regulator AcrR [Escherichia coli O157:H7 str. EC4045... gi\|253972434, gi... - gi\|254160533\|ref\|YP_003043641.1\| DNA-binding transcriptional repressor [Escherichia coli B str. REL6... gi\|209917680, gi... - gi\|209917680\|ref\|YP_002291764.1\| DNA-binding transcriptional repressor AcrR [Escherichia coli SE11],... gi\|254591047, gi... - gi\|254791647\|ref\|YP_003076484.1\| DNA-binding transcriptional repressor [Escherichia coli O157:H7 str... gi\|209398873, gi... - gi\|209398873\|ref\|YP_002269114.1\| transcriptional regulator AcrR [Escherichia coli O157:H7 str. EC411... gi\|218364143, gi... - gi\|218557374\|ref\|YP_002390287.1\| DNA-binding transcriptional repressor AcrR [Escherichia coli S88], ... gi\|218359798, gi... - gi\|218553030\|ref\|YP_002385943.1\| DNA-binding transcriptional repressor AcrR [Escherichia coli IAI1],... gi\|218693926, gi... - gi\|218693926\|ref\|YP_002401593.1\| DNA-binding transcriptional repressor AcrR [Escherichia coli 55989]... gi\|91071111, gi\|... - gi\|91209537\|ref\|YP_539523.1\| DNA-binding transcriptional repressor AcrR [Escherichia coli UTI89], gi... gi\|218688327, gi... - gi\|218688327\|ref\|YP_002396539.1\| DNA-binding transcriptional repressor AcrR [Escherichia coli ED1a],... gi\|168778957, gi... - gi\|189002881\|gb\|EDU71867.1\| transcriptional regulator AcrR [Escherichia coli O157:H7 str. EC4076], g... gi\|168777160, gi... - gi\|187767542\|gb\|EDU31386.1\| transcriptional regulator AcrR [Escherichia coli O157:H7 str. EC4196], g... gi\|189379242, gi... - gi\|189379242\|gb\|EDU97658.1\| transcriptional regulator AcrR [Escherichia coli O157:H7 str. EC508], gi... gi\|189373587, gi... - gi\|189373587\|gb\|EDU92003.1\| transcriptional regulator AcrR [Escherichia coli O157:H7 str. EC869], gi... gi\|170518898, gi... - gi\|170681180\|ref\|YP_001742608.1\| transcriptional regulator AcrR [Escherichia coli SMS-3-5], gi\|17051... gi\|169887884, gi... - gi\|170080049\|ref\|YP_001729369.1\| DNA-binding transcriptional repressor [Escherichia coli str. K-12 s... gi\|208727376, gi... - gi\|208807575\|ref\|ZP_03249912.1\| transcriptional regulator AcrR [Escherichia coli O157:H7 str. EC4206... gi\|115511846, gi... - gi\|117622722\|ref\|YP_851635.1\| DNA-binding transcriptional repressor AcrR [Escherichia coli APEC O1],... gi\|195936027 - gi\|195936027\|ref\|ZP_03081409.1\| DNA-binding transcriptional repressor AcrR [Escherichia coli O157:H7...	141.0	[0..1]	[212..1]
gi\|197284045, gi... - gi\|197284045\|ref\|YP_002149917.1\| acrAB operon repressor (tetR-family transcriptional regulator) [Pro... gi\|227358084, gi... - gi\|227358084\|ref\|ZP_03842426.1\| acrAB operon repressor (tetR-family transcriptional regulator) [Prot... gi\|17973458 - gi\|17973458\|gb\|AAL32124.1\| regulatory protein AcrR [Proteus mirabilis]	141.0	[0..1]	[212..1]
gi\|189369138, gi... - gi\|189369138\|gb\|EDU87554.1\| transcriptional regulator AcrR [Escherichia coli O157:H7 str. EC4501], g... gi\|217322149, gi... - gi\|217325928\|ref\|ZP_03442012.1\| transcriptional regulator AcrR [Escherichia coli O157:H7 str. TW1458... gi\|25324178, gi\|... - pir\|\|A85544 acrAB operon repressor [imported] - Escherichia coli (strain O157:H7, substrain EDL933)... gi\|12513331, gi\|... - gi\|15800193\|ref\|NP_286205.1\| DNA-binding transcriptional repressor AcrR [Escherichia coli O157:H7 ED... gi\|13359974, gi\|... - gi\|15829771\|ref\|NP_308544.1\| DNA-binding transcriptional repressor AcrR [Escherichia coli O157:H7 st... gi\|13359974, gi\|... - gi\|15829771\|ref\|NP_308544.1\| acrAB operon repressor [Escherichia coli O157:H7], gi\|13359974\|dbj\|BAB3...	140.0	[0..1]	[212..1]
gi\|33520754 - gi\|33520754\|gb\|AAQ21214.1\| putative repressor for the acrAB genes [Erwinia amylovora]	140.0	[0..1]	[212..1]
gi\|71557188, gi\|... - gi\|71736635\|ref\|YP_276142.1\| transcriptional regulator TtgR [Pseudomonas syringae pv. phaseolicola 1...	139.0	[0..1]	[209..1]
gi\|213924937, gi... - gi\|213970265\|ref\|ZP_03398395.1\| transcriptional regulator, TetR family [Pseudomonas syringae pv. tom... gi\|28854690, gi\|... - gi\|28871439\|ref\|NP_794058.1\| TetR family transcriptional regulator [Pseudomonas syringae pv. tomato ... tr\|Q87X86\|Q87X86... - Transcriptional regulator, TetR family OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_4...	139.0	[0..1]	[211..1]
gi\|238729078, gi... - gi\|77979365\|ref\|ZP_00834784.1\| COG1309: Transcriptional regulator [Yersinia intermedia ATCC 29909], ...	138.0	[0..1]	[210..1]
gi\|105893736, gi... - gi\|67658994\|ref\|ZP_00456361.1\| regulatory protein, TetR [Burkholderia cenocepacia AU 1054], gi\|67093... gi\|67663906, gi\|... - gi\|67663906\|ref\|ZP_00461184.1\| regulatory protein, TetR [Burkholderia cenocepacia HI2424], gi\|671024...	137.0	[0..1]	[213..22]
gi\|34499899 - gi\|34499899\|gb\|AAQ73535.1\| AcrR [Salmonella enteritidis] gi\|224582314, gi... - gi\|224582314\|ref\|YP_002636112.1\| potential acrAB operon repressor [Salmonella enterica subsp. enteri... gi\|206707759, gi... - gi\|207855956\|ref\|YP_002242607.1\| DNA-binding transcriptional repressor AcrR [Salmonella enterica sub... gi\|205351785, gi... - gi\|205351785\|ref\|YP_002225586.1\| DNA-binding transcriptional repressor AcrR [Salmonella enterica sub... gi\|197940267, gi... - gi\|198245751\|ref\|YP_002214430.1\| transcriptional regulator AcrR [Salmonella enterica subsp. enterica... gi\|34499899\|gb\|A... - AcrR [Salmonella enteritidis]	136.0	[0..1]	[211..1]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARKTKKQAQ ETRQQILDTA LRVFSEHGVS ATSLSDIATA AGVTRGAIYW HFKNKAEIFD  60
   61 EIWALAESKI SEFEIEYQTK FPDNPLRVMR ELLIYMLRLT VSDTHWRSIM EIVFHKCEFV 120
  121 GEMLQSYNAR KELYLSCYVD IEENLIECIR MGMLPTDIHP RRAAIALRAY FSGVMENWLF 180
  181 MPESFDLDQE APALVDAFID MLHFSPALRK PAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.522879
Match:	2uxhA
Description:	No description for 2uxhA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits