YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50120309, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	228 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50120309, gi|....

Description	E-value	Query Range	Subject Range
gi\|112774536 - gi\|112774536\|gb\|ABI20705.1\| putative MotA/TolQ/ExbB proton channel [Delftia sp. AN3]	213.0	[0..2]	[220..33]
gi\|71556307, gi\|... - gi\|71735754\|ref\|YP_275910.1\| tolQ protein [Pseudomonas syringae pv. phaseolicola 1448A], gi\|71556307...	212.0	[0..2]	[226..7]
gi\|16116634 - gi\|16116634\|emb\|CAC82706.1\| TolQ protein [Erwinia chrysanthemi]	211.0	[0..1]	[228..1]
gi\|28871120, gi\|... - gi\|28871120\|ref\|NP_793739.1\| tolQ protein [Pseudomonas syringae pv. tomato str. DC3000], gi\|28854370... gi\|237800221 - gi\|237800221\|ref\|ZP_04588682.1\| MotA/TolQ/ExbB proton channel [Pseudomonas syringae pv. oryzae str. ... tr\|F3G1F2\|F3G1F2... - MotA/TolQ/ExbB proton channel OS=Pseudomonas syringae pv. pisi str. 1704B GN=PSYPI_00040 PE=3 SV=1 gi\|63255367, gi\|... - gi\|66044660\|ref\|YP_234501.1\| MotA/TolQ/ExbB proton channel [Pseudomonas syringae pv. syringae B728a]... tr\|Q87Y37\|Q87Y37... - TolQ protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=tolQ-2 PE=3 SV=1 gi\|213926186, gi... - gi\|213969188\|ref\|ZP_03397327.1\| MotA/TolQ/ExbB proton channel [Pseudomonas syringae pv. tomato T1], ...	211.0	[0..2]	[226..7]
gi\|37525404, gi\|... - gi\|37525404\|ref\|NP_928748.1\| colicin uptake protein TolQ [Photorhabdus luminescens subsp. laumondii ...	211.0	[0..1]	[222..1]
tr\|E4R7V4\|E4R7V4... - TolQ OS=Pseudomonas putida (strain BIRD-1) GN=tolQ PE=3 SV=1 gi\|24982667, gi\|... - gi\|26987954\|ref\|NP_743379.1\| biopolymer transport protein TolQ [Pseudomonas putida KT2440], gi\|24982... gi\|166861680, gi... - gi\|167035192\|ref\|YP_001670423.1\| protein TolQ [Pseudomonas putida GB-1], gi\|166861680\|gb\|ABZ00088.1\|... tr\|I7CI79\|I7CI79... - Biopolymer transport protein TolQ OS=Pseudomonas putida (strain DOT-T1E) GN=tolQ PE=3 SV=1 gi\|5514776 - gi\|5514776\|emb\|CAB50778.1\| TolQ protein [Pseudomonas putida] gi\|119859089, gi... - gi\|170723157\|ref\|YP_001750845.1\| protein TolQ [Pseudomonas putida W619], gi\|169761160\|gb\|ACA74476.1\|... gi\|148546491, gi... - gi\|148546491\|ref\|YP_001266593.1\| Tol-Pal system, TolQ [Pseudomonas putida F1], gi\|148510549\|gb\|ABQ77...	210.0	[0..2]	[226..7]
gi\|77632114, gi\|... - gi\|77632114\|ref\|ZP_00794700.1\| COG0811: Biopolymer transport proteins [Yersinia pseudotuberculosis I... gi\|89105194, gi\|... - gi\|89105194\|ref\|ZP_01177718.1\| COG0811: Biopolymer transport proteins [Yersinia pestis biovar Orient... gi\|167423896, gi... - gi\|167423896\|ref\|ZP_02315649.1\| protein TolQ [Yersinia pestis biovar Mediaevalis str. K1973002], gi\|... gi\|108778509, gi... - gi\|108806596\|ref\|YP_650512.1\| colicin uptake protein TolQ [Yersinia pestis Antiqua], gi\|108778509\|gb... gi\|166962182, gi... - gi\|167419441\|ref\|ZP_02311194.1\| protein TolQ [Yersinia pestis biovar Orientalis str. MG05-1020], gi\|... gi\|229679247, gi... - gi\|229903477\|ref\|ZP_04518590.1\| membrane spanning protein in TolA-TolQ-TolR complex [Yersinia pestis... gi\|25301389 - pir\|\|AI0137 TolQ colicin import protein [imported] - Yersinia pestis (strain CO92) gi\|45435727, gi\|... - gi\|45440869\|ref\|NP_992408.1\| colicin uptake protein TolQ [Yersinia pestis biovar Microtus str. 91001... gi\|165989516, gi... - gi\|166011568\|ref\|ZP_02232466.1\| protein TolQ [Yersinia pestis biovar Antiqua str. E1979001], gi\|1659... gi\|22126934, gi\|... - gi\|22126934\|ref\|NP_670357.1\| colicin uptake protein TolQ [Yersinia pestis KIM], gi\|21959974\|gb\|AAM86... gi\|165924350, gi... - gi\|165924350\|ref\|ZP_02220182.1\| protein TolQ [Yersinia pestis biovar Orientalis str. F1991016], gi\|1... gi\|15979188, gi\|... - gi\|218928289\|ref\|YP_002346164.1\| colicin uptake protein TolQ [Yersinia pestis CO92], gi\|16121421\|ref... gi\|167050445, gi... - gi\|167399737\|ref\|ZP_02305255.1\| protein TolQ [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|167... gi\|51588782, gi\|... - gi\|51595500\|ref\|YP_069691.1\| colicin uptake protein TolQ [Yersinia pseudotuberculosis IP 32953], gi\|... gi\|77636419, gi\|... - gi\|77636419\|ref\|ZP_00798493.1\| COG0811: Biopolymer transport proteins [Yersinia pestis Angola], gi\|1... gi\|166207200, gi... - gi\|166211429\|ref\|ZP_02237464.1\| protein TolQ [Yersinia pestis biovar Antiqua str. B42003004], gi\|166... gi\|149291253, gi... - gi\|149366879\|ref\|ZP_01888913.1\| TolQ colicin import protein [Yersinia pestis CA88-4125], gi\|14929125... gi\|145211536, gi... - gi\|145599840\|ref\|YP_001163916.1\| colicin uptake protein TolQ [Yersinia pestis Pestoides F], gi\|14521... gi\|229841058, gi... - gi\|229841058\|ref\|ZP_04461217.1\| membrane spanning protein in TolA-TolQ-TolR complex [Yersinia pestis... Q66D93\|Q66D93_YERPS - TolQ colicin import protein - Yersinia pseudotuberculosis gi\|229843162, gi... - gi\|229843162\|ref\|ZP_04463308.1\| membrane spanning protein in TolA-TolQ-TolR complex [Yersinia pestis... gi\|229703884, gi... - gi\|229893999\|ref\|ZP_04509185.1\| membrane spanning protein in TolA-TolQ-TolR complex [Yersinia pestis...	210.0	[0..1]	[228..1]
gi\|238721439, gi... - gi\|77972485\|ref\|ZP_00828050.1\| COG0811: Biopolymer transport proteins [Yersinia frederiksenii ATCC 3... gi\|123443149, gi... - gi\|123443149\|ref\|YP_001007123.1\| colicin uptake protein TolQ [Yersinia enterocolitica subsp. enteroc... gi\|238765248, gi... - gi\|238765248\|ref\|ZP_04626177.1\| hypothetical protein ykris0001_32630 [Yersinia kristensenii ATCC 336... gi\|238757965, gi... - gi\|238757965\|ref\|ZP_04619146.1\| hypothetical protein yaldo0001_8410 [Yersinia aldovae ATCC 35236], g...	210.0	[0..1]	[228..1]
gi\|49081978 - gi\|49081978\|gb\|AAT50389.1\| PA0969 [synthetic construct]	210.0	[0..2]	[226..7]
gi\|116048894, gi... - gi\|32040976\|ref\|ZP_00138559.1\| COG0811: Biopolymer transport proteins [Pseudomonas aeruginosa UCBPP-... gi\|254245252, gi... - gi\|84322555\|ref\|ZP_00970640.1\| COG0811: Biopolymer transport proteins [Pseudomonas aeruginosa 2192],... gi\|152986028, gi... - gi\|94417932\|ref\|ZP_01297748.1\| hypothetical protein PaerP_01000080 [Pseudomonas aeruginosa PA7], gi\|... TOLQ_PSEAE - Protein tolQ OS=Pseudomonas aeruginosa GN=tolQ PE=3 SV=1 TOLQ_PSEAE - Protein TolQ OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=tolQ... gi\|107100425 - gi\|107100425\|ref\|ZP_01364343.1\| hypothetical protein PaerPA_01001450 [Pseudomonas aeruginosa PACS2] gi\|218773288, gi... - gi\|218893060\|ref\|YP_002441929.1\| TolQ protein [Pseudomonas aeruginosa LESB58], gi\|218773288\|emb\|CAW2...	209.0	[0..2]	[226..7]

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Predicted Domain #1

Region A:
Residues: [1-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDMNVFDLF LKASLLVKLI MLILICFSIA SWAIIIQRTR ILNAATRDAE AFEDKFWSGI  60
   61 ELSRLYQESQ TRRDSLTGTE QIFHSGFKEF ARLHRVNSHV PEAVVEGASR AMRISMNREL 120
  121 ETLETHIPFL GTVGSISPYI GLFGTVWGIM HAFIALGAVK QATLQMVAPG IAEALIATAI 180
  181 GLFAAIPAVM AYNRLSQRVG KLEQNYDNFT EEFIAILHRQ AFSIDNSK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	62.366532
Match:	PF01618.7
Description:	No description for PF01618.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits