YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49611158, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49611158, gi|....

Description	E-value	Query Range	Subject Range
gi\|167994218, gi... - gi\|205327882\|gb\|EDZ14646.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar 4,[5... gi\|167552448, gi... - gi\|205322930\|gb\|EDZ10769.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar Sain... gi\|205350653, gi... - gi\|205350653\|gb\|EDZ37284.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar Hada... gi\|168241545, gi... - gi\|205339682\|gb\|EDZ26446.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar Heid... gi\|168238546, gi... - gi\|197288662\|gb\|EDY28037.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar Schw... FLHE_SALTY - Flagellar protein flhE OS=Salmonella typhimurium GN=flhE PE=1 SV=1 gi\|205331998, gi... - gi\|205331998\|gb\|EDZ18762.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar Kent... gi\|213163287 - gi\|213163287\|ref\|ZP_03348997.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteric... gi\|206708370, gi... - gi\|207856567\|ref\|YP_002243218.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteri... gi\|205272163, gi... - gi\|205352382\|ref\|YP_002226183.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteri... gi\|204931000, gi... - gi\|204931000\|ref\|ZP_03221826.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar ... gi\|213649608 - gi\|213649608\|ref\|ZP_03379661.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteric... gi\|213622665 - gi\|213622665\|ref\|ZP_03375448.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteric... gi\|213583151 - gi\|213583151\|ref\|ZP_03364977.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteric... gi\|213426387 - gi\|213426387\|ref\|ZP_03359137.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteric... gi\|194405871, gi... - gi\|194447567\|ref\|YP_002045966.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar... gi\|194442967, gi... - gi\|194442967\|ref\|YP_002041178.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar... gi\|205342735, gi... - gi\|205342735\|gb\|EDZ29499.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar Welt... gi\|195633928, gi... - gi\|195633928\|gb\|EDX52280.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar Newp... gi\|198244044, gi... - gi\|198244044\|ref\|YP_002215171.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar... gi\|197261641, gi... - gi\|197261641\|ref\|ZP_03161715.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar ... gi\|194737915, gi... - gi\|194737915\|ref\|YP_002114948.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar... gi\|238912510 - gi\|238912510\|ref\|ZP_04656347.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteric... gi\|194472694, gi... - gi\|194472694\|ref\|ZP_03078678.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar ... FLHE_SALTI - Flagellar protein flhE OS=Salmonella typhi GN=flhE PE=3 SV=1 FLHE_SALTI - Flagellar protein FlhE OS=Salmonella typhi GN=flhE PE=3 SV=1 gi\|224468111, gi... - gi\|224583584\|ref\|YP_002637382.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteri... FLHE_SALTY - Flagellar protein FlhE OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=flhE PE=1 ... gi\|213999606 - gi\|213999606\|ref\|ZP_03410341.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteric... gi\|29141447, gi\|... - gi\|29141447\|ref\|NP_804789.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enterica s... gi\|213976806 - gi\|213976806\|ref\|ZP_03404065.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteric... gi\|16760861 - gi\|16760861\|ref\|NP_456478.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enterica s... gi\|213857335 - gi\|213857335\|ref\|ZP_03384306.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=flhE] [protein=flagellar protein] [protein_id=YP_005237879.1] [location=complement(2019224..20... gi\|62128122, gi\|... - gi\|62180489\|ref\|YP_216906.1\| flagellar protein [Salmonella enterica subsp. enterica serovar Cholerae... FLHE_SALTY - Flagellar protein flhE OS=Salmonella typhimurium GN=flhE PE=1 SV=1	164.0	[0..5]	[139..1]
gi\|153950066, gi... - gi\|77628866\|ref\|ZP_00791452.1\| hypothetical protein YpseI_01000188 [Yersinia pseudotuberculosis IP 3... gi\|170024655, gi... - gi\|170024655\|ref\|YP_001721160.1\| flagellar FlhE family protein [Yersinia pseudotuberculosis YPIII], ... gi\|51596003, gi\|... - gi\|51596003\|ref\|YP_070194.1\| flagellar protein FlhE precursor [Yersinia pseudotuberculosis IP 32953]... gi\|186895106, gi... - gi\|186895106\|ref\|YP_001872218.1\| flagellar FlhE family protein [Yersinia pseudotuberculosis PB1/+], ... gi\|12698842 - gi\|12698842\|gb\|AAK01702.1\|AF330138_1 flagella apparatus protein FlhE [Yersinia pseudotuberculosis]	163.0	[0..3]	[139..8]
gi\|197362094, gi... - gi\|197362094\|ref\|YP_002141731.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteri... gi\|56127425, gi\|... - gi\|56413168\|ref\|YP_150243.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enterica s...	163.0	[0..5]	[139..1]
gi\|229897894, gi... - gi\|229897894\|ref\|ZP_04513045.1\| flagellar protein FlhE precursor [Yersinia pestis biovar Orientalis ... gi\|229897168, gi... - gi\|229897168\|ref\|ZP_04512324.1\| flagellar protein FlhE precursor [Yersinia pestis biovar Orientalis ... gi\|229701156, gi... - gi\|229896233\|ref\|ZP_04511403.1\| flagellar protein FlhE precursor [Yersinia pestis Pestoides A], gi\|2... gi\|108779076, gi... - gi\|108807163\|ref\|YP_651079.1\| flagellar protein FlhE precursor [Yersinia pestis Antiqua], gi\|1087790... gi\|165913351, gi... - gi\|89105481\|ref\|ZP_01178000.1\| hypothetical protein Ypesb_01000586 [Yersinia pestis biovar Orientali... gi\|165926012, gi... - gi\|165926012\|ref\|ZP_02221844.1\| flagellar protein FlhE [Yersinia pestis biovar Orientalis str. F1991... gi\|165990207, gi... - gi\|166010863\|ref\|ZP_02231761.1\| flagellar protein FlhE [Yersinia pestis biovar Antiqua str. E1979001... gi\|166211192, gi... - gi\|166211192\|ref\|ZP_02237227.1\| flagellar protein FlhE [Yersinia pestis biovar Antiqua str. B4200300... gi\|167400997, gi... - gi\|167400997\|ref\|ZP_02306500.1\| flagellar protein FlhE [Yersinia pestis biovar Antiqua str. UG05-045... gi\|167420366, gi... - gi\|167420366\|ref\|ZP_02312119.1\| flagellar protein FlhE [Yersinia pestis biovar Orientalis str. MG05-... gi\|25325926 - pir\|\|AF0218 flagellar protein FlhE precursor [imported] - Yersinia pestis (strain CO92) gi\|167055185, gi... - gi\|167425786\|ref\|ZP_02317539.1\| flagellar protein FlhE [Yersinia pestis biovar Mediaevalis str. K197... gi\|108776141, gi... - gi\|229902874\|ref\|ZP_04517991.1\| flagellar protein FlhE precursor [Yersinia pestis Nepal516], gi\|2296... gi\|167469707 - gi\|167469707\|ref\|ZP_02334411.1\| flagellar protein FlhE precursor [Yersinia pestis FV-1] gi\|45436278, gi\|... - gi\|45441417\|ref\|NP_992956.1\| flagellar protein FlhE precursor [Yersinia pestis biovar Microtus str. ... gi\|21959386, gi\|... - gi\|22126399\|ref\|NP_669822.1\| flagellar protein [Yersinia pestis KIM], gi\|21959386\|gb\|AAM86073.1\|AE01... gi\|149292672, gi... - gi\|149366259\|ref\|ZP_01888294.1\| flagellar protein FlhE precursor [Yersinia pestis CA88-4125], gi\|149... gi\|218928914, gi... - gi\|218928914\|ref\|YP_002346789.1\| flagellar protein FlhE precursor [Yersinia pestis CO92], gi\|1612204... gi\|145598620, gi... - gi\|145598620\|ref\|YP_001162696.1\| flagellar protein FlhE precursor [Yersinia pestis Pestoides F], gi\|...	161.0	[0..3]	[139..8]
FLHE_YEREN - Flagellar protein FlhE OS=Yersinia enterocolitica GN=flhE PE=3 SV=1	159.0	[0..2]	[139..7]
gi\|75235318 - gi\|75235318\|ref\|ZP_00719544.1\| hypothetical protein EcolE1_01002870 [Escherichia coli E110019] gi\|75228741 - gi\|75228741\|ref\|ZP_00715354.1\| hypothetical protein EcolB7_01002972 [Escherichia coli B7A] gi\|75209445 - gi\|75209445\|ref\|ZP_00709673.1\| hypothetical protein EcolB_01003383 [Escherichia coli B171] gi\|253978033, gi... - gi\|254288726\|ref\|YP_003054474.1\| hypothetical protein ECD_01849 [Escherichia coli BL21(DE3)], gi\|253... gi\|253973839, gi... - gi\|254161938\|ref\|YP_003045046.1\| hypothetical protein ECB_01849 [Escherichia coli B str. REL606], gi...	158.0	[0..13]	[139..1]
gi\|75239702 - gi\|75239702\|ref\|ZP_00723665.1\| hypothetical protein EcolF_01002899 [Escherichia coli F11]	155.0	[0..13]	[139..1]
FLHE_ECOLI - Flagellar protein flhE precursor - Escherichia coli EG14013 - proton seal during flagellar secretion / Proton seal during flagellar secretion; periplasmic; bound ... gi\|187733152, gi... - gi\|75175729\|ref\|ZP_00695929.1\| hypothetical protein SboyB_01004194 [Shigella boydii BS512], gi\|18773... gi\|75256486 - gi\|75256486\|ref\|ZP_00728132.1\| hypothetical protein EcolE2_01003580 [Escherichia coli E22] gi\|81245053, gi\|... - gi\|82543642\|ref\|YP_407589.1\| flagellar protein [Shigella boydii Sb227], gi\|81245053\|gb\|ABB65761.1\| f... gi\|253773165, gi... - gi\|253773165\|ref\|YP_003035996.1\| flagellar FlhE family protein [Escherichia coli BL21(DE3)], gi\|2533... gi\|251785326, gi... - gi\|251785326\|ref\|YP_002999630.1\| hypothetical protein B21_01838 [Escherichia coli BL21], gi\|24237759... gi\|238901093, gi... - gi\|238901093\|ref\|YP_002926889.1\| hypothetical protein BWG_1692 [Escherichia coli BW2952], gi\|2388603... gi\|169889369, gi... - gi\|170081534\|ref\|YP_001730854.1\| hypothetical protein ECDH10B_2019 [Escherichia coli str. K-12 subst... gi\|157161349, gi... - gi\|157161349\|ref\|YP_001458667.1\| flagellar protein FlhE [Escherichia coli HS], gi\|157067029\|gb\|ABV06... gi\|188487722, gi... - gi\|188492523\|ref\|ZP_02999793.1\| flagellar protein FlhE [Escherichia coli 53638], gi\|188487722\|gb\|EDU... gi\|1736523, gi\|8... - gi\|89108718\|ref\|AP_002498.1\| flagellar protein [Escherichia coli str. K-12 substr. W3110], gi\|173652... gi\|209919304, gi... - gi\|209919304\|ref\|YP_002293388.1\| flagellar protein FlhE [Escherichia coli SE11], gi\|209912563\|dbj\|BA... EG14013 - proton seal during flagellar secretion / Proton seal during flagellar secretion; periplasmic; bound ... gi\|218361234, gi... - gi\|218554466\|ref\|YP_002387379.1\| hypothetical protein ECIAI1_1965 [Escherichia coli IAI1], gi\|218361... gi\|157079161, gi... - gi\|157157131\|ref\|YP_001463183.1\| flagellar protein FlhE [Escherichia coli E24377A], gi\|157079161\|gb\|... gi\|218352176, gi... - gi\|218695444\|ref\|YP_002403111.1\| hypothetical protein EC55989_2057 [Escherichia coli 55989], gi\|2183...	154.0	[0..5]	[139..1]
gi\|254592902, gi... - gi\|254793502\|ref\|YP_003078339.1\| hypothetical protein ECSP_2452 [Escherichia coli O157:H7 str. TW143... gi\|195939582 - gi\|195939582\|ref\|ZP_03084964.1\| flagellar protein [Escherichia coli O157:H7 str. EC4024] gi\|13362056, gi\|... - gi\|15831842\|ref\|NP_310615.1\| flagellar protein [Escherichia coli O157:H7], gi\|13362056\|dbj\|BAB36011.... gi\|209767326, gi... - pir\|\|H85800 flagellar protein [imported] - Escherichia coli (strain O157:H7, substrain EDL933), pir... gi\|13362056, gi\|... - gi\|15831842\|ref\|NP_310615.1\| flagellar protein [Escherichia coli O157:H7 str. Sakai], gi\|13362056\|db... gi\|168747908, gi... - gi\|188017483\|gb\|EDU55605.1\| flagellar protein FlhE [Escherichia coli O157:H7 str. EC4113], gi\|168747... gi\|12515940, gi\|... - gi\|15802290\|ref\|NP_288315.1\| flagellar protein [Escherichia coli O157:H7 EDL933], gi\|12515940\|gb\|AAG... gi\|168757915, gi... - gi\|189355201\|gb\|EDU73620.1\| flagellar protein FlhE [Escherichia coli O157:H7 str. EC4401], gi\|168757... gi\|189360273, gi... - gi\|189360273\|gb\|EDU78692.1\| flagellar protein FlhE [Escherichia coli O157:H7 str. EC4486], gi\|168770... gi\|168789746, gi... - gi\|189370677\|gb\|EDU89093.1\| flagellar protein FlhE [Escherichia coli O157:H7 str. EC869], gi\|1687897...	153.0	[0..5]	[139..1]
gi\|26248144, gi\|... - gi\|26248144\|ref\|NP_754184.1\| flagellar protein flhE precursor [Escherichia coli CFT073], gi\|26108548... gi\|227837268, gi... - gi\|227885695\|ref\|ZP_04003500.1\| flagellar protein flhE precursor [Escherichia coli 83972], gi\|227837...	153.0	[0..5]	[139..1]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKVIRSLVA TALVFPLCAI ATPGSWNGSM PGIKLDHRGE MVTTSAFIPN IAVKPDETIT  60
   61 TIYWRHVIDS AIPVGLVVKL CSQSPQRCVD LDGSGDGQTQ AFDGLAANNE FRFVYYIEGN 120
  121 GRINHSFSVR TIDIAVNYK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.366532
Match:	PF06366.4
Description:	No description for PF06366.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits